Locus 5932

Sequence ID 3R_DroMel_CAF1
Location 15,631,789 – 15,631,879
Length 90
Max. P 0.531129
window9684

overview

Window 4

Location 15,631,789 – 15,631,879
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 86.84
Mean single sequence MFE -23.92
Consensus MFE -18.11
Energy contribution -18.39
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.76
SVM decision value -0.00
SVM RNA-class probability 0.531129
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15631789 90 - 27905053
GGAGCGAAACGGGCUUUAGUAGACGACUGCUGCUCGGGUCUAAAAUUUAUGACCGACUUAAUGGCAAAUGCAAAUAUUUGGCACAGAGGU
.........(((((...(((((....))))))))))((((..........))))..(((..((.((((((....)))))).))..))).. ( -23.20)
>DroSec_CAF1 160258 90 - 1
GGAGCGAAACGGGCUUUAGUAGACGACUGCUGCUCGGGUCUAAAAUUUAUGACCGACUUAAUGCCAAAUGCAAAUAUUUGGCACAGAGGU
.........(((((...(((((....))))))))))((((..........))))..(((..(((((((((....)))))))))..))).. ( -27.80)
>DroEre_CAF1 138253 76 - 1
CGAGCGAAACGGGCUUU--------------GCUCGGGUCUAAAAUUUAUGACCGACUUAAUGCCAAAUGCAAAUAUUUGGCGCAGAGGU
((((((((......)))--------------)))))((((..........))))..(((..(((((((((....)))))))))..))).. ( -26.70)
>DroYak_CAF1 151155 90 - 1
CGAGCGAAACGGGCUUUACUAGACGACUGCUGCUCGGGUCUAAAAUUUAUGACCGACUUAAUGCCAAAUGCAAAUAUUUGGCACAGAGGU
((((((...(((.((.....))....))).))))))((((..........))))..(((..(((((((((....)))))))))..))).. ( -26.40)
>DroAna_CAF1 153399 79 - 1
CGAGCGAGGCGGGCUUUAGU-----------GGUCGGGUCUAAAAUUUAUGAUCGACUUUAUGGCAAAUGCAAAUAUUUGGCACAGAGGU
(((.(((((....))))...-----------).)))((((..........))))..((((.((.((((((....)))))).)).)))).. ( -15.50)
>consensus
CGAGCGAAACGGGCUUUAGUAGACGACUGCUGCUCGGGUCUAAAAUUUAUGACCGACUUAAUGCCAAAUGCAAAUAUUUGGCACAGAGGU
.........(((((.................)))))((((..........))))..(((..(((((((((....)))))))))..))).. (-18.11 = -18.39 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:20 2006