| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,629,396 – 15,629,487 |
| Length | 91 |
| Max. P | 0.926202 |
| Location | 15,629,396 – 15,629,487 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 91.85 |
| Mean single sequence MFE | -19.22 |
| Consensus MFE | -17.14 |
| Energy contribution | -17.17 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.926202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15629396 91 + 27905053 AAUUAUGCUUACAAA--AAAGUGUGACAUUUUGGCGUGACAUUUUAUGAAAAUUUAUGAUCACUUUUGUGGUUAUUUA---------ACAUAAUGUGGUAUG ...((((((.(((..--(((((((.((........)).)))))))..........((((((((....))))))))...---------......))))))))) ( -18.80) >DroSec_CAF1 157885 91 + 1 AAUUAUGCUUACAAA--AAAGUGUGACAUUUUGGCGUGACAUUUUAUGAAAAUUUAUGACCACUUUUGUGGUUAUUUA---------ACAUAAUGUGGUAUG ...((((((.(((..--(((((((.((........)).)))))))..........((((((((....))))))))...---------......))))))))) ( -21.40) >DroSim_CAF1 139389 91 + 1 AAUUAUGCUUACAAA--AAAGUGUGACAUUUUAGCGUGACAUUUUAUGAAAAUUUAUGAUCACUUUUGUGGUUAUUUA---------ACAUAAUGUGCUAUG ..((((((((.....--.))))))))........((((.(((.(((((.......((((((((....))))))))...---------.))))).))).)))) ( -17.30) >DroEre_CAF1 136009 99 + 1 AAUUAUGCCUACAAA--AAAGUGUGACAUUUUGGCGUGACAUUUUCUCAAAAUUUAUGAUCACUUUUGUGGUUAUUUAACAUAUUUAACAUAAUGUGG-AUG ..(((((((......--((((((...)))))))))))))((((............((((((((....))))))))....((((((......)))))))-))) ( -18.30) >DroYak_CAF1 148790 92 + 1 AAUUAUGCUUACAAAA-AAAGUGUGACAUUUUGGCGUGACAUUUUAUGAAAAUUUAUGAUCACUUUUGUGGUUAUUUA---------ACAUAAUGUGGUAUG ...((((((.(((...-(((((((.((........)).)))))))..........((((((((....))))))))...---------......))))))))) ( -18.80) >DroAna_CAF1 150971 93 + 1 AAUUAUGGUUACAAAAAAAAGUGUGACGUUUUAGCGUGACAUUUUAUGAAAAUUUACGAUCACUUUUGUGGUUAUUUA---------ACAUAAUAUGGUAUG .((((((..........(((((((.((((....)))).)))))))............((((((....)))))).....---------.))))))........ ( -20.70) >consensus AAUUAUGCUUACAAA__AAAGUGUGACAUUUUGGCGUGACAUUUUAUGAAAAUUUAUGAUCACUUUUGUGGUUAUUUA_________ACAUAAUGUGGUAUG .((((((..........(((((((.((........)).)))))))..........((((((((....)))))))).............))))))........ (-17.14 = -17.17 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:19 2006