Locus 5930

Sequence ID 3R_DroMel_CAF1
Location 15,628,401 – 15,628,502
Length 101
Max. P 0.867988
window9682

overview

Window 2

Location 15,628,401 – 15,628,502
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.17
Mean single sequence MFE -29.77
Consensus MFE -25.20
Energy contribution -25.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.85
SVM decision value 0.86
SVM RNA-class probability 0.867988
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15628401 101 - 27905053
--------------AAUGCUUUC-----AGAAGCAUAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACAUGUCUUG
--------------.((((((..-----..)))))).(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).))).......... ( -30.20)
>DroVir_CAF1 280359 114 - 1
GCUAUUC-UGCGCGACUACUUUC-----GUAUCGCUAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACUUGGAAGC
(((.(((-...((((.(((....-----)))))))..(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).)))....)))))) ( -33.50)
>DroGri_CAF1 183802 109 - 1
UCUAUUUUCGCA----CCUUUUU-----GUGC--GUAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACAUGCAAGC
........((((----(......-----))))--)..(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).))).......... ( -31.40)
>DroMoj_CAF1 254859 109 - 1
AAUUUAC-CGCA----CACUUCA-----GUAU-GCUAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACAUGCAAGC
.......-....----.......-----((((-(...(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).))).))))).... ( -29.20)
>DroAna_CAF1 150038 106 - 1
--------------AAUGCUUCAUCAAUCGAAACAUAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACAUGCUGUG
--------------.(((.(((.......))).))).(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).))).......... ( -26.70)
>DroPer_CAF1 185425 105 - 1
--------------AAUGCCCUUUCAAUCGG-ACAUAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACAUGCGAAC
--------------.(((.((........))-.))).(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).))).......... ( -27.60)
>consensus
______________AAUGCUUUA_____GGAA_CAUAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCACAUGCAAGC
.....................................(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).))).......... (-25.20 = -25.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:07 2006