Locus 593

Sequence ID 3R_DroMel_CAF1
Location 2,200,394 – 2,200,513
Length 119
Max. P 0.625734
window945

overview

Window 5

Location 2,200,394 – 2,200,513
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 78.69
Mean single sequence MFE -18.47
Consensus MFE -14.25
Energy contribution -14.70
Covariance contribution 0.45
Combinations/Pair 1.17
Mean z-score -1.35
Structure conservation index 0.77
SVM decision value 0.19
SVM RNA-class probability 0.625734
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2200394 119 + 27905053
CAAACAUGUGGCUUGCAACGCAUCAAUCGUAAGUUACUAAACUAAAAUGUGUGCCACGUGAUA-ACAACCAACUAAUUCAAAUUAACAAAACAACAUUUUUUGUUCGCAUACACUAUAUA
.......(((((((((............)))))))))..........(((((((...((....-))..................(((((((.......))))))).)))))))....... ( -19.70)
>DroEre_CAF1 3754 112 + 1
CCAACAUGUGGCUUGCAAUGAAACAACCGUGAGUUACUAAGCUAAAAUGCCUGCCACGUGAUAAAUAACCAAAUAAUUUACAUUAGU------ACAUUUUUUGUUCACAUAUAUACU-U-
....((((((((..((((((.......))).((((....))))....)))..)))))))).........((((.(((.(((....))------).))).))))..............-.- ( -21.10)
>DroYak_CAF1 3629 112 + 1
GAAGCAUGUGGCUUGCAACACAACAGCCGUGAGUUACCAAUCUAAAAUGCCUGCCACGCGAUAAAUAACCAAAUAACUUAAAUUAAU------ACAUUUUUUGUUCACAUACACACG-U-
...((..(((((..(((.(((.......)))((........))....)))..)))))))............................------........................-.- ( -14.60)
>consensus
CAAACAUGUGGCUUGCAACGCAACAACCGUGAGUUACUAAACUAAAAUGCCUGCCACGUGAUAAAUAACCAAAUAAUUUAAAUUAAU______ACAUUUUUUGUUCACAUACACACU_U_
....((((((((..((((((.......))).((((....))))....)))..))))))))............................................................ (-14.25 = -14.70 +   0.45) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:57 2006