Locus 5929

Sequence ID 3R_DroMel_CAF1
Location 15,624,780 – 15,624,877
Length 97
Max. P 0.845252
window9681

overview

Window 1

Location 15,624,780 – 15,624,877
Length 97
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.62
Mean single sequence MFE -30.81
Consensus MFE -20.41
Energy contribution -20.41
Covariance contribution 0.00
Combinations/Pair 1.35
Mean z-score -2.39
Structure conservation index 0.66
SVM decision value 0.77
SVM RNA-class probability 0.845252
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15624780 97 - 27905053
UU-GU---GUCUUGUGACAAACGAGGCAGGUGAUUUCGGGCUUCGGCUAAUUGAGCAGGG-----GAAAAUGCCCAAAUCGCUUGCCAAUUCAUAAGUUCAUAAAU
((-((---(.((((((((....).((((((((((((.(((((((.(((.....)))....-----)))...))))))))))))))))...)))))))..))))).. ( -36.30)
>DroSec_CAF1 153246 96 - 1
UU-GU---GUCUUGUGACAAACGAGGCAGGUGAUUUUGGGCUGCGGCUAAUUGAGC-GGG-----GAAAAUGUCCAAAUCGCUUGCCAAUUCAUAAAUUCAUAAAG
((-((---(..(((((((....).((((((((((((.(((((.(.(((.....)))-.).-----).....))))))))))))))))...))))))...))))).. ( -30.90)
>DroSim_CAF1 134777 97 - 1
UU-GU---GUCUUGUGACAAACGAGGCAGGUGAUUUUGGGCUGCGGCUAAUUGAGCAGGG-----GAAAAUGCCCAAAUCGCUUGCCAAUUCAUAAAUUCAUAAAG
((-((---(..(((((((....).((((((((((((.((((....(((.....)))....-----......))))))))))))))))...))))))...))))).. ( -31.64)
>DroEre_CAF1 131459 89 - 1
---GU---GCCUUGUGACAAACGAGGCAGGUGACUGCG-GCCGCGGCUAAUUGAGCAGGG-----GAAAAUGCCCAAAUCGCCUGCCAAUUCAUAAAUUCA-----
---..---...(((((((....).((((((((((((((-((....)))......))))((-----(......)))...)))))))))...)))))).....----- ( -30.90)
>DroYak_CAF1 143420 92 - 1
UU-GU---GCCUCGUGACAAACGAGGCAGGUGAUUUCGGGUCUCGGCUCAUUGAGCAGGG-----GAAAAUGUACAAAUCGCUUGCCAAUUCAUAAAUUCA-----
((-((---(..((((.....))))((((((((((((((..((((.((((...))))..))-----))...))...))))))))))))....))))).....----- ( -31.00)
>DroAna_CAF1 146637 98 - 1
UCCGUCCGAUCUUGUGACCAACGGGGCAGGUGAUUUUCGGC--CGGCUAAUUGACCAGGCUGAACAAAAAGGCCCGAAAUGUUUGCCAAUUCAUAAAUUU------
.((((..(.((....)))..))))((((..(.(((((.(((--((((.....).)).(......).....)))).))))))..)))).............------ ( -24.10)
>consensus
UU_GU___GUCUUGUGACAAACGAGGCAGGUGAUUUCGGGCUGCGGCUAAUUGAGCAGGG_____GAAAAUGCCCAAAUCGCUUGCCAAUUCAUAAAUUCA_____
...........((((.....))))((((((((((((.((((....(((.....)))...............))))))))))))))))................... (-20.41 = -20.41 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:06 2006