Locus 5928

Sequence ID 3R_DroMel_CAF1
Location 15,616,675 – 15,616,772
Length 97
Max. P 0.724960
window9680

overview

Window 0

Location 15,616,675 – 15,616,772
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 83.56
Mean single sequence MFE -33.90
Consensus MFE -31.67
Energy contribution -31.70
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.93
SVM decision value 0.41
SVM RNA-class probability 0.724960
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15616675 97 + 27905053
GGCAUUCGUAUGGUAUCAGGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCA-GUUGAC
..................((((((((..((((.(((.(.((((....))))).))).))))......((((.......)))))))))))).-...... ( -33.00)
>DroVir_CAF1 265173 97 + 1
ACUGCAGUGUAUAUACAAGGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCAAG-GGAU
..................((((((((..((((.(((.(.((((....))))).))).))))......((((.......))))))))))))...-.... ( -33.00)
>DroGri_CAF1 170085 97 + 1
ACUCACAUGUGUUCACAUGGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCUGCAUCUCCAAA-UGGU
............(((..(((((((((((((((.(((.(.((((....))))).))).)))).((((((.....)).)))))))))))))))..-))). ( -34.80)
>DroSec_CAF1 145235 93 + 1
GACUAAC---UAUCAUCAG-GGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCA-GUUGUC
(((...(---(((((((.(-((......))).))))))))((((((.....)))...((.(((((.(((((.......))))).)))))))-)))))) ( -32.10)
>DroYak_CAF1 135056 97 + 1
GACAUUCAUUGUCCGUCAGGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCAAGUUGA-
((((.....)))).....((((((((..((((.(((.(.((((....))))).))).))))......((((.......)))))))))))).......- ( -36.00)
>DroMoj_CAF1 241233 97 + 1
ACUACAACGCAUUCAACAGGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCAAG-UGGU
(((((...(.......).((((((((..((((.(((.(.((((....))))).))).))))......((((.......))))))))))))..)-)))) ( -34.50)
>consensus
ACCAAACUGUAUUCAUCAGGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUACGGGGAUCGAUGCCCCGCAUCUCCAAG_UGAU
..................((((((((..((((.(((.(.((((....))))).))).))))......((((.......))))))))))))........ (-31.67 = -31.70 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:06 2006