Locus 5925

Sequence ID 3R_DroMel_CAF1
Location 15,609,516 – 15,609,608
Length 92
Max. P 0.770230
window9675

overview

Window 5

Location 15,609,516 – 15,609,608
Length 92
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 77.32
Mean single sequence MFE -23.42
Consensus MFE -14.08
Energy contribution -14.50
Covariance contribution 0.42
Combinations/Pair 1.19
Mean z-score -1.66
Structure conservation index 0.60
SVM decision value 0.53
SVM RNA-class probability 0.770230
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15609516 92 + 27905053
-----AUUA-AGUUAUGC-C-CCGUAGAUUUCCGAUACGGAAGGUACAGCCUUAACCAAUGGCGAAGCUAUCACCUUUGCCAUUCGCAUUGCACAGCAAC
-----....-.((.((((-.-(((((.........)))))((((.....))))....((((((((((.......)))))))))).)))).))........ ( -25.40)
>DroVir_CAF1 254088 100 + 1
AAUCAACUUAAAUUCUUUUACUUGCAGAUUUCCGACACGGAGGGCACUGCUUUGACCAAUGGCGAGGCCAUCAGCUUUGCCAUACGCAUCGCCCAGCAAC
.....................((((.....((((...))))((((..(((........((((((((((.....))))))))))..)))..)))).)))). ( -29.90)
>DroSec_CAF1 133501 93 + 1
-----AUUA-AAUUAUUCCC-CCGUAGAUUUCCGAUACGGAAGGCACAGCCCUAACCAAUGGCGAAGCUAUCACCUUUGCCAUUCGCAUUGCCCAGCAAC
-----....-..........-(((((.........)))))..((((..((.......((((((((((.......)))))))))).))..))))....... ( -21.50)
>DroYak_CAF1 127533 93 + 1
-----AUUA-AGUUAUUCCC-CCGCAGAUCUCUGAUACGGAAGGCACAGCUUUAACCAAUGGCGAAGCUAUCACCUUUGCCAUUCGCAUCGCCCAGCAAC
-----....-.(((.((((.-...(((....)))....))))(((...((.......((((((((((.......)))))))))).))...))).)))... ( -22.00)
>DroAna_CAF1 129777 93 + 1
UUU--CCAA-A---AAUCUU-UUGCAGAUUUCCGAUACAGAGGGCACGGCAUUGACCAAUGGCGAGGCCAUCACCUUUGCCAUUCGCAUAGCCCAGCACU
...--....-(---(((((.-....))))))..........((((..((......))((((((((((.......))))))))))......))))...... ( -22.90)
>DroPer_CAF1 163391 94 + 1
-----CCCU-AACUAUUCCCUAUACAGAUCUCCGAUACAGAAGGCACUGCCCUGACCAAUGGAGAGGCCAUCACCUUUGCCAUUCGGAUCGCCCAGCAGC
-----....-......................((((.(((..(((...)))))).((((((((((((......))))).))))).))))))......... ( -18.80)
>consensus
_____ACUA_AAUUAUUCCC_CCGCAGAUUUCCGAUACGGAAGGCACAGCCUUAACCAAUGGCGAAGCCAUCACCUUUGCCAUUCGCAUCGCCCAGCAAC
............................((((((...))))))((...((.....(.((((((((((.......)))))))))).)....))...))... (-14.08 = -14.50 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:01 2006