Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,605,448 – 15,605,568 |
Length | 120 |
Max. P | 0.527539 |
Location | 15,605,448 – 15,605,568 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -41.23 |
Consensus MFE | -23.04 |
Energy contribution | -23.85 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.36 |
Mean z-score | -2.27 |
Structure conservation index | 0.56 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15605448 120 - 27905053 CAGUUUUUGAGCGCUGGUUUUUGGGCAAUUGGCCAACAUGGCCACAUGGGAAUUGGCCAUGAUGGUCCAGGAGACUUCGUGCUGCUCACAAAUGUCCAGGAAAUGUGCCGUACUGAACAU ((((...((.((((...((((((((((.(((((((.((((((((.((....)))))))))).))).))))(((.(........)))).....))))))))))..)))))).))))..... ( -46.70) >DroPse_CAF1 140454 120 - 1 CAACUUUUGGGCCUUGGUUUGCGGACAAUUGGCCAACAUGGCCACAUGGGAAUUGGCCAUAAUACACCAGGAGAUUUCAUGCUGCUCACAGAUCUCCAGAAAGUGCCCAGGACUAAACAU ....(((((((((((.......((.....(((((((((((....))))....))))))).......)).((((((((............))))))))...))).))))))))........ ( -36.20) >DroEre_CAF1 110201 120 - 1 CAGUUUUGGAGCACUGGUUUUGGGACAAUUGGCCAACAUGGCCACAUGGGAGUUGGCCAUGAUGGUCCAGGAGACUUCGUGCUGCUCACAAAGGUCCAGGAAGUGUGCUGUACUGAACAU ..((((((.(((((.(.(((..((((..(((((((.(((((((((......).)))))))).))).))))....(((.(((.....))).)))))))..))).)))))).))..)))).. ( -44.20) >DroYak_CAF1 123603 120 - 1 CAGUUUUUGAGCAUUGGUUUUUGGACAAUUGGCCAGCAUGGCCACAUGGGAGUUGGCCAUGAUGGUCCAAGAGACUUCGUGCUGCUCACAAAGGUCCAGGAAGUGUGCGGUACUGAAAAU ((((......((((...(((((((((..(((((((.(((((((((......).)))))))).))).))))....(((.(((.....))).))))))))))))..))))...))))..... ( -44.60) >DroAna_CAF1 125763 120 - 1 CAGUUUCUGAGCACGAGUUUGCGGACAAUUCGCCAGCAUAGCCACGUGGGAGUUGGCCAUAACAGUCCAACUGACUUCGUGCUGUUCGCACAGCUCCAAAAAAUGGCCAGUGCUGAACAU ..((((...(((((..(((.(((((...))))).)))...((((..(.(((((((((...(((((..(..........)..))))).)).)))))))...)..))))..))))))))).. ( -39.50) >DroPer_CAF1 156007 120 - 1 CAACUUUUGGGCCUUGGUUUGCGAACAAUUGGCCAACAUGGCCACAUGGGAAUUGGCCAUAAUACACCAGGAGAUUUCAUGCUGCUCACAGAUCUCCAGAAAGUGCCCAGGACUAAACAU ....(((((((((((((((((....))).(((((((((((....))))....)))))))......))).((((((((............))))))))...))).))))))))........ ( -36.20) >consensus CAGUUUUUGAGCACUGGUUUGCGGACAAUUGGCCAACAUGGCCACAUGGGAAUUGGCCAUAAUAGUCCAGGAGACUUCGUGCUGCUCACAAAGCUCCAGAAAGUGUCCAGUACUGAACAU ((.(((((((((((.(((((((((((...(((((((((((....))))....))))))).....)))).)))))))..)))))(....).......)))))).))............... (-23.04 = -23.85 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:00 2006