Locus 5923

Sequence ID 3R_DroMel_CAF1
Location 15,602,585 – 15,602,705
Length 120
Max. P 0.575238
window9673

overview

Window 3

Location 15,602,585 – 15,602,705
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 74.86
Mean single sequence MFE -39.33
Consensus MFE -26.80
Energy contribution -28.55
Covariance contribution 1.75
Combinations/Pair 1.30
Mean z-score -1.46
Structure conservation index 0.68
SVM decision value 0.08
SVM RNA-class probability 0.575238
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15602585 120 + 27905053
GUUGAAGAAACAGGCGUAGGCUACGGCAAGCAUGUGGGUGGUAUUCCGGCCUAUGAGGCCCACUAUAUCGGAUUGAAGGAGUCCCAAUGAUCGCAUAUAGCUGGCCAAGCGCAUGGCGUU
(((.....))).(((((..((....))...((((((..((((.....((((.....))))((((((((.((((((..((....))..))))).))))))).))))))..))))))))))) ( -37.90)
>DroPse_CAF1 137536 120 + 1
GUUGAAGAAGCAGCCAUACGCGACGGCAGGGAUAUGGCUGGUAUUCCUGGCUAUAAUCCCCACGAUGUCCGACUGGAGGAGACCCUUCGAUCGCAUAUACGAGGCCACGCGCAUCGCAUU
(((.....))).((.((.((((..(((.((((((((((..(.....)..))))).)))))..((((((.(((.((((((....)))))).))).)))).))..))).)))).)).))... ( -44.00)
>DroAna_CAF1 119166 120 + 1
AUUGAAAAAACAAGCAUAGGCCACGGCGGGUAAAUUGGUAGUAUUCCUGCCAAUAAUUCCAACCACAUCAGUUUGUUGGAGGCCCUCAGAUCUUAUGUAACUUGCGACAUGCAUUAUAUU
.............(((((((.....(.((((..((((((((.....))))))))..(((((((.((....))..))))))))))).)....)))))))....(((.....)))....... ( -30.90)
>DroPer_CAF1 150836 120 + 1
GUUGAAGAAGCAGCCAUACGCGACGGCAGGGAUAUGGCUGGUAUUCCUGGCUAUAAUCCCCACGAUGUCCGACUGAAGGAGACCCUUCGAUCGCAUAUACGAGGCCACGCGCAUUGCAUU
(((.....))).((.((.((((..(((.((((((((((..(.....)..))))).)))))..((((((.(((.((((((....)))))).))).)))).))..))).)))).)).))... ( -44.50)
>consensus
GUUGAAGAAACAGCCAUACGCGACGGCAGGGAUAUGGCUGGUAUUCCUGCCUAUAAUCCCCACGAUAUCCGACUGAAGGAGACCCUUCGAUCGCAUAUACCAGGCCACGCGCAUUGCAUU
...................(((..(((.(((((((((((((.....)))))))).)))))....((((.((((((((((....)))))))))).)))).....)))...)))........ (-26.80 = -28.55 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:58 2006