| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,602,271 – 15,602,391 |
| Length | 120 |
| Max. P | 0.789658 |
| Location | 15,602,271 – 15,602,391 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.06 |
| Mean single sequence MFE | -41.88 |
| Consensus MFE | -28.11 |
| Energy contribution | -30.55 |
| Covariance contribution | 2.44 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15602271 120 - 27905053 UGUGGCCACGCCCAUCGAAGAAAACUUCCAGCCAGCUAAGCUGGAAAAGGGCAACGAUCAGACUUUGGCCAUUCUCUGCUCUUCGGGAACAACUGGUACUCCAAAGGCAGUAACUAUAAC .(((((((.((((...((((....))))...(((((...)))))....))))..(.....)....)))))))...((((.(((.(((.((.....)).).)).))))))).......... ( -36.40) >DroPse_CAF1 137216 120 - 1 ACUCUCAUCCCCCAUCGAGGAGAACUUUCGGCCCGUGCGACUGGAGCAGGGCAUCGAUCAGACCCUGGCGAUACUCUGCUCCUCGGGCACCACGGGCAUCCCCAAGGCGGUGACCAUCAC ....(((((((....(((((.....)))))((((((((((..(((((((((.((((.((((...)))))))).)))))))))))).....)))))))........)).)))))....... ( -47.30) >DroAna_CAF1 118852 120 - 1 UCUGGCCACGCCAAUCGAGGAUAACUUUCAGCCCGCCGAACUGGAACAUGGAAAUGAUCAAACUUUGGCCAUUCUGUGUUCCUCGGGCACCACUGGCAUUCCCAAGGCUGUGACGAUCUC ..((((...)))).....((((......(((((.(((.....(((((((((((.((..((.....))..)))))))))))))...))).....(((.....))).))))).....)))). ( -36.50) >DroPer_CAF1 150516 120 - 1 ACUCUCAUCCCCCAUCGAGGAGAACUUUCGGCCCGUGCGACUGGAGCAGGGCAUCGAUCAGACUCUGGCGAUACUCUGCUCCUCGGGCACCACGGGCAUCCCCAAGGCGGUGACCAUCAC ....(((((((....(((((.....)))))((((((((((..(((((((((.((((.((((...)))))))).)))))))))))).....)))))))........)).)))))....... ( -47.30) >consensus ACUCGCAACCCCCAUCGAGGAGAACUUUCAGCCCGCGCAACUGGAACAGGGCAACGAUCAGACUCUGGCCAUACUCUGCUCCUCGGGCACCACGGGCAUCCCCAAGGCGGUGACCAUCAC .....(((((((....((((....))))..(((((((...(((((((((((.((((.((((...)))))))).)))))))))..))....)))))))........)))))))........ (-28.11 = -30.55 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:57 2006