Locus 5921

Sequence ID 3R_DroMel_CAF1
Location 15,597,315 – 15,597,435
Length 120
Max. P 0.612932
window9671

overview

Window 1

Location 15,597,315 – 15,597,435
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.42
Mean single sequence MFE -45.14
Consensus MFE -37.22
Energy contribution -37.98
Covariance contribution 0.76
Combinations/Pair 1.14
Mean z-score -1.37
Structure conservation index 0.82
SVM decision value 0.16
SVM RNA-class probability 0.612932
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15597315 120 - 27905053
UCUCAGAGAUGCCCCAGGUCGCCGAGGUCUGUGUCUUCGGGAUAUGGAGCAACAUCUUUGGAGACGAAGCUGCUGCUGCUGUUGUUAAGAAACUGGGCAGUGAGCUGGAGGCCCAGGAUG
..........(((((((.((((....((((((.((((.(.((((.(.((((.((.(((((....))))).)).)))).))))).).)))).)).)))).)))).)))).)))........ ( -43.90)
>DroSec_CAF1 117116 120 - 1
UCUCAGAGAUGCCCCAGGUUGCCGAGGUCUGUGUCUUCGGGAUAUGGAGCAACAUGUUUGGAGACGAAGCUGCUGCUGCUGUCGUUAAGAAACUGGGCUAUGAGCUGGAGGCCCAGGAUG
.((((.....((((..((((.((((((.......))))))((((.(.((((.((..((((....))))..)).)))).))))).......))))))))..))))((((....)))).... ( -40.50)
>DroSim_CAF1 111359 120 - 1
UCUCAGAGAUGCCCCAGGUAGCCGAGGUCUGUGUCUUCGGGAUAUGGAGCAACAUCUUUGGAGACGAAGCUGCUGCUGCUGUCGUUAAGAAACUGGGCAGUGAGCUGGAGGCCCAGGAUG
.((((....(((((.((....((((((.......))))))((((.(.((((.((.(((((....))))).)).)))).))))).........))))))).))))((((....)))).... ( -44.80)
>DroEre_CAF1 105947 120 - 1
UCUCGGAGAUGCCGCAGGUCGCCGAGGUCUGUGUCUUCGGGAUAUGGAGCAACACCUUUGGGGACGAAGCUGCAGCUUCUGUCGUUAAGAAACUGGGCACUGAGCUGGAGGCCCAGGAUG
(((((((((...(((((..(.....)..))))))))))))))...(((((..((.(((((....))))).))..))))).............((((((.((.......)))))))).... ( -48.20)
>DroYak_CAF1 118158 120 - 1
UCUCGGAGAUGCCCCAAGUCGCCGAAGUCUGUGUCUUUGGGAUAUGGAGCGACAUUUUUGGAGACGAAGCUGCAGCUGCUGUCGUAAAGAAAACGGGCUGUGAGCUGGAGGCCGAGGAUG
(((((.....((((((..((((...(((((((.((((((.((((.(.(((..((.(((((....))))).))..))).))))).))))))..)))))))))))..))).))))))))... ( -48.30)
>consensus
UCUCAGAGAUGCCCCAGGUCGCCGAGGUCUGUGUCUUCGGGAUAUGGAGCAACAUCUUUGGAGACGAAGCUGCUGCUGCUGUCGUUAAGAAACUGGGCAGUGAGCUGGAGGCCCAGGAUG
.((((....((((.(((....((((((.......))))))((((.(.((((.((.(((((....))))).)).)))).))))).........))))))).))))((((....)))).... (-37.22 = -37.98 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:55 2006