Locus 5920

Sequence ID 3R_DroMel_CAF1
Location 15,593,946 – 15,594,050
Length 104
Max. P 0.999585
window9670

overview

Window 0

Location 15,593,946 – 15,594,050
Length 104
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 90.03
Mean single sequence MFE -25.45
Consensus MFE -24.24
Energy contribution -24.19
Covariance contribution -0.05
Combinations/Pair 1.24
Mean z-score -2.68
Structure conservation index 0.95
SVM decision value 3.75
SVM RNA-class probability 0.999585
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15593946 104 + 27905053
AAUUGUUACAAAUUGAUUAAUUAUUUUAGCUGGUUAUCGA---CGAUAACCGAGUUUUGUUCCGGACUCUAGAUU------AGUUCUAAACGAAAUUGCAAUUGAUUUGUACU
......(((((((..(((............((((((((..---.))))))))(((((((((..(((((.......------)))))..)))))))))..)))..))))))).. ( -26.60)
>DroSec_CAF1 113655 104 + 1
AAUUGUUACAAAUUGAUUAAUUAUUUUAGCUGGUUAUCGA---CGAUAACCGAGUUUUGUUCCGGACUCUAGCUU------AGUUCUAAACGAAAUUGCAAUUGAUUUGUACU
......(((((((..(((............((((((((..---.))))))))(((((((((..(((((.......------)))))..)))))))))..)))..))))))).. ( -26.60)
>DroSim_CAF1 107869 104 + 1
AAUUGUUACAAAUUGAUUAAUUAUUUUAGCUGGUUAUCGA---CGAUAACCGAGUUUUGUUCCGGACUCUAGCUU------AGUUCUAAACGAAAUUGCAAUUGAUUUGUACU
......(((((((..(((............((((((((..---.))))))))(((((((((..(((((.......------)))))..)))))))))..)))..))))))).. ( -26.60)
>DroEre_CAF1 102366 107 + 1
AAUUGUUACAAAUUGAUGAAUUAUUUUAGCUGGUUAUCGACGACGAUAAUCAGGUCUUGUUCCGGACUCUAGCUU------AGUUCUAAACAAAAUUGCAAUUGAUUUGUACU
......(((((((..((((((((..((((((((((((((....))))))))))((((......)))).))))..)------)))))....((....))..))..))))))).. ( -27.40)
>DroYak_CAF1 114603 104 + 1
AAUUGUUACAAAUUGAUUAAUUAUUUUAGCUGGUUAUCGA---CGAUAAUCGAGUUUUGUUCCGGACUCUAGCUU------AGUUUUAAACGAAAUUCCAAUUGAUUUGUACU
......(((((((..(((.............(((((((..---.)))))))((((((((((..(((((.......------)))))..)))))))))).)))..))))))).. ( -25.10)
>DroAna_CAF1 114494 108 + 1
AAUUGUUACAAAUUGAUUAAUCAUUUUAGCUGGUUACCGA---UUUUAAUCAAAUUUUGUUCCGGACCCCAGCUUAUUGUUAGUUCUA--UAAAUUUGCAAUUGAUUUGUACU
......(((((((..(((.........((((((...(((.---...(((.......)))...)))...))))))....((.((((...--..)))).)))))..))))))).. ( -20.40)
>consensus
AAUUGUUACAAAUUGAUUAAUUAUUUUAGCUGGUUAUCGA___CGAUAACCGAGUUUUGUUCCGGACUCUAGCUU______AGUUCUAAACGAAAUUGCAAUUGAUUUGUACU
......(((((((..(((............(((((((((....)))))))))(((((((((..(((((.............)))))..)))))))))..)))..))))))).. (-24.24 = -24.19 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:53 2006