Locus 5919

Sequence ID 3R_DroMel_CAF1
Location 15,591,400 – 15,591,500
Length 100
Max. P 0.610542
window9669

overview

Window 9

Location 15,591,400 – 15,591,500
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.87
Mean single sequence MFE -25.29
Consensus MFE -21.42
Energy contribution -21.00
Covariance contribution -0.42
Combinations/Pair 1.13
Mean z-score -1.23
Structure conservation index 0.85
SVM decision value 0.16
SVM RNA-class probability 0.610542
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15591400 100 + 27905053
CGAUCUGGAGCAGGCCAGUUUAGAUGCCGCUUCAGAUCUGCUAGAUACAGAUAGCAAUGCAACGUUCGCAAUGGUACUUACCUCUUGAUAUAU----CUCU-UUA---------------
.((((((((((.(((..........)))))))))))))(((((........))))).(((.......)))..(((....)))...........----....-...--------------- ( -27.60)
>DroVir_CAF1 229455 104 + 1
CGAUUUGGAGCAGGCCAGUUUAGAUGCCGCUUCAGAUUUGCUCGAUACAGAUAGCAAUGCAACAUUCGCAAUGGUACUUACCUUUCAAUUAACUAA-CAAUUUGU---------------
.((((((((((.(((..........)))))))))))))........((((((.((((((...)))).))...(((....)))..............-..))))))--------------- ( -20.70)
>DroGri_CAF1 137594 100 + 1
CGAUUUGGAGCAGGCCAGUUUAGAUGCCGCUUCAGAUCUGCUUGAUACAGAUAGCAAUGCAACAUUCGCAAUGGUACUUACCUCUUAAUUAUCUAA-CUCU-------------------
.((((((((((.(((..........)))))))))))))..........((((((...(((.......)))..(((....)))......))))))..-....------------------- ( -23.90)
>DroWil_CAF1 109010 115 + 1
UGAUUUGGAGCAGGCCAGCUUAGAUGCUGCAUCAGAUCUGCUCGAUACAGAUAGCAAUGCAACAUUCGCAAUGGUACUUACCUCUUGAUUUAU----AUAA-CAUAAGCCUACCUAAGUU
.(((((((.(.((((..((...((((.(((((...(((((.......)))))....))))).)))).))...(((....)))...........----....-.....)))).)))))))) ( -26.10)
>DroMoj_CAF1 213434 104 + 1
CGAUUUGGAGCAGGCCAGUUUAGAUGCUGCUUCAGAUCUGCUCGAUACAGAUAGCAAUGCAACAUUCGCAAUGGUACUUACCUUUCAAUUUACUAA-CGAUUUGA---------------
.((((((((((((.............)))))))))))).........(((((.((((((...)))).))...(((....)))..............-..))))).--------------- ( -22.42)
>DroPer_CAF1 139024 104 + 1
AGAUCUGGAGCAGGCCUCUCUGGACGCCGCUUCAGAUCUGCUCGAUACAGAUAGCAAUGCAACGUUCGCAAUGGUACUUACCUCUUGAUAUACUAUCCUCU-UUA---------------
(((((((((((.(((.((....)).))))))))))))))..........(((((...(((.......)))..(((....)))..........)))))....-...--------------- ( -31.00)
>consensus
CGAUUUGGAGCAGGCCAGUUUAGAUGCCGCUUCAGAUCUGCUCGAUACAGAUAGCAAUGCAACAUUCGCAAUGGUACUUACCUCUUAAUUUACUAA_CUAU_UGA_______________
.((((((((((.(((..........)))))))))))))((((..........)))).(((.......)))..(((....)))...................................... (-21.42 = -21.00 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:51 2006