| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,589,958 – 15,590,073 |
| Length | 115 |
| Max. P | 0.628701 |
| Location | 15,589,958 – 15,590,073 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.86 |
| Mean single sequence MFE | -39.38 |
| Consensus MFE | -27.44 |
| Energy contribution | -28.55 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.628701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15589958 115 - 27905053 CACACGCCUGUCCACACAUCGAUGGCCUUCGUAUAGGAAACGGGCGGCAGGGAGGCGUUUAUGCCCGACGUCUGGGUGGCCAUGGUCAGCAGGGUGGUGACACCUGCAAAAGG-GG---- ...((((((..(((........)))(((((((...(....)..)))).))).)))))).....((((((...(((....)))..))).(((((.((....)))))))....))-).---- ( -42.80) >DroVir_CAF1 227948 113 - 1 CAGACGCCGGUCCAAACAUCGAUUGCCUUUGUAUAGGAAACGGGCGGCAGUGAGGCAUUAAUGCCUGAUGUUUGUGUGGCCAUUGUGAGUAAAGUGGUUACACCUUUAAAAGA------- ..(((....))).(((((((.((((((...((...(....)..)))))))).(((((....))))))))))))(((((((((((........)))))))))))..........------- ( -39.20) >DroPse_CAF1 127919 119 - 1 CAGACGCCGGUCCACACAUCAAUCGCCUUCGUAUAGGAUACUGGUGGCAGUGAUGCAUUUAUGCCCGAUGUUUGUGUUGCCAUGGUCAAUAGAGUGGUGACACCUGUGUGACA-GAUCCA ((((((.(((......(((((....(((......)))....)))))(((....)))........))).))))))..........((((((((.(((....))))))).)))).-...... ( -34.70) >DroGri_CAF1 136096 116 - 1 CAGACGCCGGUCCAAACAUCGAUUGCCUUUGUAUAGGAAACGGGCGGCAGUGAGGCAUUAAUGCCCGAUGUUUGGGUGGCCAUCGUUAGCAGUGUGGUAACACCUAAAAGAAACCA---- ..((((..(((((((((((((((((((...((...(....)..))))))))..((((....))))))))))))))...)))..))))....((((....)))).............---- ( -38.70) >DroWil_CAF1 107303 114 - 1 CAGACGCCGGUCCAGACAUCAAUUGCCUUCGUAUACGAUACGGGUGGCAGUGAGGCAUUAAUGCCCGAUGUUUGGGUAGCCAUUGUCAGCAGAGUGGUGACACCUAAAAUGA--CC---- ..((((..((((((((((((.(((((((((((((...))))))).))))))(.((((....))))))))))))))...)))..))))...((.(((....))))).......--..---- ( -43.70) >DroMoj_CAF1 211899 113 - 1 CAGACGCCGGUCCAAACAUCGAUUGCCUUUGUAUAGGAAACGGGCGGCAGUGAGGCAUUAAUGCCCGAUGUUUGUGUGGCCAUAGUUAGUAAAGUGGUUACACCUAGAACAAA------- ..(((....))).((((((((((((((...((...(....)..))))))))..((((....))))))))))))((((((((((..........))))))))))..........------- ( -37.20) >consensus CAGACGCCGGUCCAAACAUCGAUUGCCUUCGUAUAGGAAACGGGCGGCAGUGAGGCAUUAAUGCCCGAUGUUUGGGUGGCCAUGGUCAGCAGAGUGGUGACACCUAAAAAAAA_______ ........(((.((((((((.(((((((((((.......))))).))))))..((((....)))).)))))))).((..((((..........))))..)))))................ (-27.44 = -28.55 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:49 2006