Locus 5916

Sequence ID 3R_DroMel_CAF1
Location 15,569,919 – 15,570,023
Length 104
Max. P 0.987955
window9665

overview

Window 5

Location 15,569,919 – 15,570,023
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 73.38
Mean single sequence MFE -28.10
Consensus MFE -24.43
Energy contribution -23.77
Covariance contribution -0.66
Combinations/Pair 1.08
Mean z-score -1.28
Structure conservation index 0.87
SVM decision value 2.10
SVM RNA-class probability 0.987955
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15569919 104 - 27905053
ACUCCAUUUAGGACCCUGUGUGUUUCCGUGUGUGUGUGUGCGGUUGCGGGUACUGGUGAGUGUGAGUAAUAUUCCGCAGCCAGGAUUUGCAUAAAGCUCACCUC
....(((...(((..(.....)..)))..)))...(((.((...(((((((.(((((..(((.((((...))))))).))))).)))))))....)).)))... ( -29.90)
>DroSim_CAF1 89088 78 - 1
--------------------UGUGUGUG------UGUGUGCGGUUGCGGGUACUGGUGCGUAUGAGUAAUAUUCUGCAGCCAGGAUUUGCAUAAAGCUCACCUC
--------------------.(((.((.------..((((((((((((((((((.((....)).))))....))))))))).......)))))..)).)))... ( -24.01)
>DroEre_CAF1 84421 85 - 1
-------------------AUGCACACAUGUAUGUGUGCGUGGUUGCGGGUACUGGUGCGUAUGAGUAAUAUUCUGCAGCCAGGAUUUGCAUAAAGCUCACCUC
-------------------(((((((((....)))))))))(((((((((((((.((....)).))))....)))))))))(((....((.....))...))). ( -30.40)
>consensus
____________________UGUAUACGUGU_UGUGUGUGCGGUUGCGGGUACUGGUGCGUAUGAGUAAUAUUCUGCAGCCAGGAUUUGCAUAAAGCUCACCUC
...................................(((.((...(((((((.(((((..(((.((((...))))))).))))).)))))))....)).)))... (-24.43 = -23.77 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:46 2006