Locus 5914

Sequence ID	3R_DroMel_CAF1
Location	15,567,454 – 15,567,556
Length	102
Max. P	0.994685

overview

Window 9

Location	15,567,454 – 15,567,556
Length	102
Sequences	5
Columns	102
Reading direction	forward
Mean pairwise identity	93.73
Mean single sequence MFE	-28.14
Consensus MFE	-23.62
Energy contribution	-24.06
Covariance contribution	0.44
Combinations/Pair	1.04
Mean z-score	-2.03
Structure conservation index	0.84
SVM decision value	1.85
SVM RNA-class probability	0.979980
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15567454 102 + 27905053
AGUUGCAACAAUUUCAAUUUGCAGCGUUAACUUGCUGCAAGCGAGGCGCUCAAAAACUUUGCCCGUAAACAACAAAGAGUUGUUGACGUUCCGCUGGAGAAU
...........((((....(((((((......)))))))((((..(((.((((.((((((....((.....))..)))))).)))))))..)))).)))).. ( -30.70)
>DroSim_CAF1 86576 102 + 1
AGUUGCAACAAUUUCAAUUUGCAGCGUUAACUUGCUGCAAGCGAGGCGCUCAAAAACUUUGCCCGUAAACAACAAAGAGUUGUUGACGUUCCGCUGGAGAAU
...........((((....(((((((......)))))))((((..(((.((((.((((((....((.....))..)))))).)))))))..)))).)))).. ( -30.70)
>DroEre_CAF1 82014 102 + 1
AGUUGCAACAAUUUCAAUUUGCAGCGUUAACUUGCUGCAAGAGAGGCGCUCAAAAACUUUGCCCGUAAACAACAAAGAGUUGUUGACGUUCCGCUGGAGAAU
....((...........(((((((((......))))))))).(..(((.((((.((((((....((.....))..)))))).)))))))..)))........ ( -25.80)
>DroYak_CAF1 91191 102 + 1
AGUUGCAACAAUUUCAAUUUGCAGCGUUAACUUGCUGCAAGCGAGGCGCUCAAAAACUUCGCCCGUAAACAACAAAGAGUUGUUGACGUUCCGCUGGAGAAU
...........((((....(((((((......)))))))((((.((((...........))))(((.((((((.....)))))).)))...)))).)))).. ( -29.90)
>DroAna_CAF1 93470 91 + 1
AGUUGCAACAAUUUCAAUUUGCAGCGUUAACUUGCAACAAGCGGGGCGCUCAAAAACUUUGCCCGUAAACAACAAAGAGUUGUUGACG---------AGA--
..(((((((((((....((((.(((((...(((((.....))))))))))))))..(((((...........))))))))))))).))---------)..-- ( -23.60)
>consensus
AGUUGCAACAAUUUCAAUUUGCAGCGUUAACUUGCUGCAAGCGAGGCGCUCAAAAACUUUGCCCGUAAACAACAAAGAGUUGUUGACGUUCCGCUGGAGAAU
.....(((((((((....((((((((......))))))))(((.((((...........)))))))..........)))))))))................. (-23.62 = -24.06 +   0.44)

alignment

secondary structure

dotplot

Window 0

Location	15,567,454 – 15,567,556
Length	102
Sequences	5
Columns	102
Reading direction	reverse
Mean pairwise identity	93.73
Mean single sequence MFE	-27.34
Consensus MFE	-25.98
Energy contribution	-26.06
Covariance contribution	0.08
Combinations/Pair	1.07
Mean z-score	-1.71
Structure conservation index	0.95
SVM decision value	2.50
SVM RNA-class probability	0.994685
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15567454 102 - 27905053
AUUCUCCAGCGGAACGUCAACAACUCUUUGUUGUUUACGGGCAAAGUUUUUGAGCGCCUCGCUUGCAGCAAGUUAACGCUGCAAAUUGAAAUUGUUGCAACU
....(((...))).(((.((((((.....)))))).))).((((...(((..((((...)))(((((((........))))))).)..)))...)))).... ( -28.80)
>DroSim_CAF1 86576 102 - 1
AUUCUCCAGCGGAACGUCAACAACUCUUUGUUGUUUACGGGCAAAGUUUUUGAGCGCCUCGCUUGCAGCAAGUUAACGCUGCAAAUUGAAAUUGUUGCAACU
....(((...))).(((.((((((.....)))))).))).((((...(((..((((...)))(((((((........))))))).)..)))...)))).... ( -28.80)
>DroEre_CAF1 82014 102 - 1
AUUCUCCAGCGGAACGUCAACAACUCUUUGUUGUUUACGGGCAAAGUUUUUGAGCGCCUCUCUUGCAGCAAGUUAACGCUGCAAAUUGAAAUUGUUGCAACU
....(((...))).(((.((((((.....)))))).))).((((((((((.(((.....)))(((((((........)))))))...)))))).)))).... ( -26.20)
>DroYak_CAF1 91191 102 - 1
AUUCUCCAGCGGAACGUCAACAACUCUUUGUUGUUUACGGGCGAAGUUUUUGAGCGCCUCGCUUGCAGCAAGUUAACGCUGCAAAUUGAAAUUGUUGCAACU
.(((....((((..(((.((((((.....)))))).)))((((...........))))))))(((((((........)))))))...)))............ ( -29.70)
>DroAna_CAF1 93470 91 - 1
--UCU---------CGUCAACAACUCUUUGUUGUUUACGGGCAAAGUUUUUGAGCGCCCCGCUUGUUGCAAGUUAACGCUGCAAAUUGAAAUUGUUGCAACU
--..(---------(((.((((((.....)))))).))))((((((((((.(((((...))))).(((((.((....)))))))...)))))).)))).... ( -23.20)
>consensus
AUUCUCCAGCGGAACGUCAACAACUCUUUGUUGUUUACGGGCAAAGUUUUUGAGCGCCUCGCUUGCAGCAAGUUAACGCUGCAAAUUGAAAUUGUUGCAACU
..............(((.((((((.....)))))).))).((((...(((..((((...)))(((((((........))))))).)..)))...)))).... (-25.98 = -26.06 +   0.08)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:41 2006