Locus 5912

Sequence ID 3R_DroMel_CAF1
Location 15,558,980 – 15,559,087
Length 107
Max. P 0.743608
window9656

overview

Window 6

Location 15,558,980 – 15,559,087
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.91
Mean single sequence MFE -44.22
Consensus MFE -28.34
Energy contribution -32.46
Covariance contribution 4.12
Combinations/Pair 1.09
Mean z-score -1.83
Structure conservation index 0.64
SVM decision value 0.46
SVM RNA-class probability 0.743608
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15558980 107 - 27905053
UCUGAGCUCUCAGUUCUCCGCUCG-------CAAUUCGCAAUUCUCCGAUUGGAGUGGGGAUGCGUAUUGUGGAGUCUGGAGUC------CGGAGUCCAGAGUCCGGGGAACUCGGUCCG
.(((((.((((.(((((((((((.-------((((.((........))))))))))))))).))......((((.((((((.(.------...).)))))).)))))))).))))).... ( -45.60)
>DroSec_CAF1 84254 100 - 1
UCUGAGCUCUCAGUUCUCCGCUCG-------CAAUUCGCAAUUCUCCGAUUGGUGUGGGGAUGCGUAUUGUGGA-------GUC------CGGAGUCCAGAGUCCGGGGAACUCGGUCCG
.(((..((((..(..(((((((((-------((((.((((..((((((.......)))))))))).))))).))-------)..------)))))..)))))..)))(((......))). ( -37.40)
>DroSim_CAF1 78251 100 - 1
UCUGAGCUCUCAGUUCUCCGCUCG-------CAAUUCGCAAUUCUCCGAUUGGUGUGGGGAUGCGUAUUGUGGA-------GUC------CGGAGUCCAGAGUCCGGGGAACUCAGUCCG
.(((..((((..(..(((((((((-------((((.((((..((((((.......)))))))))).))))).))-------)..------)))))..)))))..)))(((......))). ( -37.40)
>DroEre_CAF1 74015 101 - 1
UCUCAGUUCGCAGUUCUCCGCUCGCAGUUCGCAAUUCGCCAUUCUCCGGCCGGAGUGGGG------AUUGCGGAGUCCGGAGUC------CGGAGUCCGGAGUCCGG-------AGCCCG
......((((((((((.((((((((.....)).....(((.......)))..))))))))------)))))))).((((((.((------(((...))))).)))))-------)..... ( -49.40)
>DroYak_CAF1 82806 113 - 1
UCUGAGCUCUCAGUUCUCUGCUCG-------CAAUUCGCUAUUCUCCGACCGGAGUGGGGAUGCGGAUUGUGGAGUCCGGAGUCGGAGUCUAGAGUCCGGAGUCCGGGGAACUCAGUCCG
.(((((.((((............(-------((((((((...(((((.((....))))))).)))))))))(((.((((((.((........)).)))))).))).)))).))))).... ( -51.30)
>consensus
UCUGAGCUCUCAGUUCUCCGCUCG_______CAAUUCGCAAUUCUCCGAUUGGAGUGGGGAUGCGUAUUGUGGAGUC_GGAGUC______CGGAGUCCAGAGUCCGGGGAACUCAGUCCG
.....(..((.((((((((............((((.(((...((((((.......)))))).))).)))).(((.((((((.((........)).)))))).))))))))))).))..). (-28.34 = -32.46 +   4.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:36 2006