Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,195,673 – 2,195,772 |
Length | 99 |
Max. P | 0.520592 |
Location | 2,195,673 – 2,195,772 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 87.00 |
Mean single sequence MFE | -33.93 |
Consensus MFE | -27.17 |
Energy contribution | -26.50 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.29 |
Mean z-score | -1.84 |
Structure conservation index | 0.80 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2195673 99 - 27905053 UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUUAUAAUCUCCGCUACCAGGCGCUGGGCAUCUAGCAAGUGCUCGAGGUUCUUGAGUGCUACCUCGGCA .((((.........((((((((((((((((((.............)))).)).)))))).)))))).((..((((((...))))))..)).....)))) ( -39.62) >DroSec_CAF1 14921 99 - 1 UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUUAUAAUCUCCGCCACCAGACGCUGGGCAUCUAGCAAGUGCUCCAGGUUCGUGAGUGCCACCUCGGCA .((((.........((((((((((((((((((.............)))).)).)))))).))))))..........(((.(....).))).....)))) ( -34.02) >DroSim_CAF1 14810 99 - 1 UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUUAUAAUCUCCGCCACCAGACGCUGGGCAUCUAGCAAGUGCUCCAGGUUCUUGAGUGCCACCUCGGCA ..((((........((((((((((((((((((.............)))).)).)))))).))))))(((.((.....)).)))))))(((.....))). ( -34.62) >DroEre_CAF1 15860 99 - 1 UUACUCUGUUCAUCGCUGGAGCCCAGGUUGGUAAUAAUCUCCGCCACCAGGCGCUGGGCAUCUAGCAGGUACUCCAGGUUUUUGAGUGCUACUUCGGCA ..((((.....(((((((((((((((...(((....)))..((((....)))))))))).)))))).((....)).)))....))))(((.....))). ( -34.50) >DroYak_CAF1 13903 99 - 1 UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUAAUUAUCUCCGCCACUAGGCGCUGGGCAUCUAGCAAGUGCUCUAUGUUUUUGAGUGCUACUUCGGCA .((((.........((((((((((((...(((....)))..((((....)))))))))).)))))).((..(((.........)))..)).....)))) ( -37.30) >DroAna_CAF1 24556 99 - 1 UUACUUUGAUCAUCACUGGACCCUAAAUUGGUUAUAAUCUCUGCCACCAAGCGCUGGGCAUCUAGUAGGUGUUCCAAGUCCUUUAAUACAGCUUCUGCG ..((((.((.(((((((((((((....(((((..((.....))..))))).....)))..)))))).)))).)).))))...........((....)). ( -23.50) >consensus UUGCUCUGUUCAUCGCUGGAGCCCAGGUUGGUUAUAAUCUCCGCCACCAGGCGCUGGGCAUCUAGCAAGUGCUCCAGGUUCUUGAGUGCUACCUCGGCA ..............((((((((((((((((((.............)))).)).)))))).))))))..((((((.........)))))).......... (-27.17 = -26.50 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:54 2006