Locus 5908

Sequence ID 3R_DroMel_CAF1
Location 15,550,615 – 15,550,718
Length 103
Max. P 0.990619
window9650

overview

Window 0

Location 15,550,615 – 15,550,718
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 89.22
Mean single sequence MFE -32.18
Consensus MFE -26.56
Energy contribution -28.88
Covariance contribution 2.32
Combinations/Pair 1.06
Mean z-score -2.38
Structure conservation index 0.83
SVM decision value 2.22
SVM RNA-class probability 0.990619
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15550615 103 - 27905053
CCCAUAAUAAAUGGGCCAAGAAGGCGAAUGUUUGGUCACGAAUGCGUAGUGCUGGACCGGAUCCAAUUAUGAUUCGCAGCCAAGCAGGCCAUGAAAAUGCGCA
.((((.....))))(((.....)))...((((((((..(((((.((((((..((((.....)))))))))))))))..)))))))).(((((....))).)). ( -35.60)
>DroSec_CAF1 75785 103 - 1
CCCAUAAUAAAUGGGCCAAGAAGGCGAAUGUUUGGUCAUGAAUGCGUAGUGCUGUGCCGGAUCCAAUUAUGAUUCGCAGCCAAGCAGGCCAUGAAAAUGCGCA
.((((.....))))(((.....)))...((((((((..(((((.((((((.(((...))).....)))))))))))..)))))))).(((((....))).)). ( -30.70)
>DroSim_CAF1 69764 103 - 1
CCCAUAAUAAAUGGGCCAAGAAGGCGAAUGUUUGGUCAUGAAUGCGUAGUGCUGGACCGCAUCCAAUUAUGAUUCGCAGCCAAGCAGGCCAUGAAAAUGCGCA
.((((.....))))(((.....)))...((((((((..(((((.((((((..((((.....)))))))))))))))..)))))))).(((((....))).)). ( -33.90)
>DroEre_CAF1 65749 83 - 1
CCCAUAAUAAAUGGGCCA-GAAGGCGAGUGUUUGGUCAUGAA-------------------UCCAAUUAUGAUUCGCCGCCAAGCAGGCCAUGAAAAUGCGCA
.((((.....))))(((.-...)))...((((((((..((((-------------------((.......))))))..)))))))).(((((....))).)). ( -27.50)
>DroYak_CAF1 73163 103 - 1
CCCAUAAUAAAUGGGCCAAGAAGGCGAGAGUUUGGUCUUGAAUGCGUAGUGCUGGACCGGAUCCAAUUAUGAUUCGCAGCCAAGCAGGCCAUGAAAAUGCGCA
.((((.....))))(((.....)))....(((((((..(((((.((((((..((((.....)))))))))))))))..)))))))..(((((....))).)). ( -33.20)
>consensus
CCCAUAAUAAAUGGGCCAAGAAGGCGAAUGUUUGGUCAUGAAUGCGUAGUGCUGGACCGGAUCCAAUUAUGAUUCGCAGCCAAGCAGGCCAUGAAAAUGCGCA
.((((.....))))(((.....)))...((((((((..(((((.((((((..((((.....)))))))))))))))..)))))))).(((((....))).)). (-26.56 = -28.88 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:30 2006