| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,545,479 – 15,545,576 |
| Length | 97 |
| Max. P | 0.925742 |
| Location | 15,545,479 – 15,545,576 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 78.01 |
| Mean single sequence MFE | -18.14 |
| Consensus MFE | -9.89 |
| Energy contribution | -9.87 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15545479 97 + 27905053 CGCCUGUCGACUGUCAAAUCAAUUUGUCAGAAAUCACUGACAGCUGCUUACAGCCAAAACACAC--ACACGCCGCCACUCUCGCACUCACACACACACA----- .((.(((.(..(((..........((((((......))))))((((....))))....)))..)--))).)).((.......))...............----- ( -14.80) >DroVir_CAF1 165714 89 + 1 CGCCUGUCGACUGUCAAAUCAAUUUGUCAGAAAUCAGUGACAGCUGCUUACAGCCAAAACACACAA--ACAUGGCCCAGGCCGCAGCCG--------CA----- .((.(((((.(((.((((....)))).))).......)))))(((((.....(......)......--....(((....)))))))).)--------).----- ( -21.20) >DroGri_CAF1 86950 92 + 1 CGCCUGUCGACUGUCAAAUCAAUUUGUCAGAAAUCACUGACAGCUGCUUACAGACAAAACACACAA--ACAUGGCCCAGGCCA--ACCA--------CAGCACC .((.(((.(..((((........(((((((......))))))).........))))..........--...((((....))))--.).)--------))))... ( -20.63) >DroWil_CAF1 64662 79 + 1 CGCCUGUCGACUGUCAAAUCAAUUUGUCAGAAAUCACUGACAGCUGCUUACAGCCAAAACACACAA--ACAUGGCCAACCG----------------------- .((((((....(((..........((((((......))))))((((....))))......)))...--))).)))......----------------------- ( -17.10) >DroYak_CAF1 67770 91 + 1 CGCCUGUCGACUGUCAAAUCAAUUUGUCAGAAAUCACUGACAGCUGCUUACAGCCAAAACACAC--ACACACCGCCACUCUCGCACUCACA------CA----- .(..((.(((..((..........((((((......))))))((((....))))..........--..........))..)))))..)...------..----- ( -14.70) >DroAna_CAF1 61542 83 + 1 CGCCUGUCGAGUGUCAAAUCAAUUUGUCAGAAAUCACUGACAGCUGCUUACAGCCAAAAUACACAA--GCGC--------ACACGCUCACA------CA----- .((.(((((.((((..........((((((......))))))((((....))))......))))..--.)).--------))).)).....------..----- ( -20.40) >consensus CGCCUGUCGACUGUCAAAUCAAUUUGUCAGAAAUCACUGACAGCUGCUUACAGCCAAAACACACAA__ACACGGCCAAGCCCGCACUCA________CA_____ ....(((....(((..........((((((......))))))((((....))))......))).....)))................................. ( -9.89 = -9.87 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:29 2006