| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,541,845 – 15,541,945 |
| Length | 100 |
| Max. P | 0.964744 |
| Location | 15,541,845 – 15,541,945 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.32 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -11.06 |
| Energy contribution | -11.81 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.964744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15541845 100 + 27905053 UUAAUUAAAAACUUGCUGCAUAAAAACUGGCAGCAGCACAUCGAGGAAA--GCUGCACUGCCGGAAAAGUUUCUUCAC---GCCGAAGAGUAG--GUA-AAAAUAA-------UG ..........((((((..........(((((((((((............--)))))..)))))).......(((((..---...)))))))))--)).-.......-------.. ( -26.30) >DroSec_CAF1 67363 100 + 1 UUAAUUAAAAACUUGCUGCAUAAAAACUGGCAGCAGCAAAUCGAGGAAA--GCUGCACUGCCGGAAAAGUUUCUUCAC---GCCGAAGAGUAG--CUA-AAAAUAA-------UU ..............(((((.......(((((((((((............--)))))..)))))).......(((((..---...)))))))))--)..-.......-------.. ( -28.10) >DroSim_CAF1 61370 99 + 1 UUAAUUAAAAACUUGCUGCAUAAAAACUGGCAGCAGCAAAUCGAGGAAA--GCUGCACUGCCGGAAAAGUUUCUUCAC---GCCGAAGAGUAG--CUA-AAAAUAA-------U- ..............(((((.......(((((((((((............--)))))..)))))).......(((((..---...)))))))))--)..-.......-------.- ( -28.10) >DroEre_CAF1 57072 77 + 1 UUAAUUAAAAACUUGCUGCAUAAAAACUGGCAGCGGCAAAUCGAGGA-A--GCUGCACUGCCGGAAAAGUUUCUGAAU---UG-------------------------------- ....(((.(((((((((((..........)))))((((.....((..-.--.))....))))....)))))).)))..---..-------------------------------- ( -17.60) >DroYak_CAF1 64391 101 + 1 UUAAUUAAAAACUUGCUGCAUAAAAACUGGCAGCAGCAAAUCGAGGAAA--GCUGCACUGCUGGAAAAGUUUCCUGAC---UGCGAAGAGUAG--CUGCAAAAUAA-------UU ..............(((((.......(..((((((((............--)))))..)))..)...((((....)))---).......))))--)..........-------.. ( -22.60) >DroPer_CAF1 81033 102 + 1 UUAAUUAAAAACUUGCAGAA---------GCAGCAGCAAAUCGAGGAGAAGGAUGCACGGAGAGAAA--UCACAAAACACUUCUGAAGAGUAAACCUC-AAAAAAAGGAAGUAU- ..........((((.(((((---------(..(((.(...((.....))..).))).....((....--))........))))))..))))...(((.-......)))......- ( -16.00) >consensus UUAAUUAAAAACUUGCUGCAUAAAAACUGGCAGCAGCAAAUCGAGGAAA__GCUGCACUGCCGGAAAAGUUUCUUCAC___GCCGAAGAGUAG__CUA_AAAAUAA_______U_ ..........................(((((((((((..............)))))..))))))................................................... (-11.06 = -11.81 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:28 2006