Locus 5905

Sequence ID 3R_DroMel_CAF1
Location 15,540,061 – 15,540,160
Length 99
Max. P 0.825645
window9647

overview

Window 7

Location 15,540,061 – 15,540,160
Length 99
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 87.57
Mean single sequence MFE -30.84
Consensus MFE -21.22
Energy contribution -22.38
Covariance contribution 1.16
Combinations/Pair 1.11
Mean z-score -2.47
Structure conservation index 0.69
SVM decision value 0.70
SVM RNA-class probability 0.825645
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15540061 99 - 27905053
CUUUGCCUUGGGUUGCUCCAGCUCCA------GCACCAGCACCAGCUUGGGGAUCCUGGAGGACAUCUACUGCUCCUGCAACCC---------CUUCUUCAUUAUCCCCCGCCA
.........((((((((((((.(((.------((....)).((.....)))))..)))))(((((.....)).))).)))))))---------..................... ( -27.80)
>DroSec_CAF1 65561 105 - 1
CUUUGCCUUGGGUUGCUCCAGCUCCAGUUUCAGCUCCAGCACCAGCUUGGGGAUCCUGGAGAACAUCUACUGCUCCUGCAACCC---------CUUCUUCAUUAUCCUCCGCCA
.........(((((((..(((((((((......(((((((....)).)))))...))))))........))).....)))))))---------..................... ( -28.30)
>DroSim_CAF1 59568 105 - 1
CUUUGCCUUGGGUUGCUCCAGCUCCAGUUUCAGCUCCAGCACCAGCUUGGGGAUCCUGGAGGACAUCUACUGCUCCUGCAACCC---------CUUCUUCAUUAUCCUCCACCA
.........(((((((...((((((((......(((((((....)).)))))...)))))((....))...)))...)))))))---------..................... ( -29.30)
>DroEre_CAF1 55363 113 - 1
CUUUGCC-UCGGUUGCUCCAGCUACAGCUCCAGCUCCAGCAGCAGCUUGGGGAUCCUGGAGGACAUCUACUGCUCCUGCAACCCCUUCCACCCCUUCUGCAUUAUCCGCCGGCA
...((((-.(((.((((..((((........))))..))))((((...((((....((((((........(((....)))....))))))))))..)))).....)))..)))) ( -36.40)
>DroYak_CAF1 62533 105 - 1
CUUUGCCUUCGGUUGCUCCAGCUUCAGCUCCAGCACCAGCACCAGCUUGGGGAUCCUGGAGGACAUCUACUGCUCUUGGAACCC---------CUUCUUCAAUAUCCCCCAGCA
...(((....(((.(((..(((....)))..)))))).)))...(((.((((((..(((((((..((((.......))))....---------.)))))))..)))))).))). ( -32.40)
>consensus
CUUUGCCUUGGGUUGCUCCAGCUCCAGCUCCAGCUCCAGCACCAGCUUGGGGAUCCUGGAGGACAUCUACUGCUCCUGCAACCC_________CUUCUUCAUUAUCCCCCGCCA
.........((((((((((((((((((((...((....))...))).)))))...)))))(((((.....)).))).))))))).............................. (-21.22 = -22.38 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:27 2006