Locus 5904

Sequence ID 3R_DroMel_CAF1
Location 15,539,223 – 15,539,314
Length 91
Max. P 0.684918
window9646

overview

Window 6

Location 15,539,223 – 15,539,314
Length 91
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 83.01
Mean single sequence MFE -23.80
Consensus MFE -18.28
Energy contribution -17.81
Covariance contribution -0.47
Combinations/Pair 1.18
Mean z-score -1.76
Structure conservation index 0.77
SVM decision value 0.31
SVM RNA-class probability 0.684918
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15539223 91 - 27905053
CCUCUUGUUUAUGGCUUUGUUUGCACUUUUGUUUAUGGGUGUACAUUUUAAACGCUAUGAGCACCUGCUCCGCCAUCAUG-----------UGUGGCUGCUU-----
.....((((((((((((((..(((((((........))))))).....)))).))))))))))...((...(((((....-----------.))))).))..----- ( -24.80)
>DroPse_CAF1 66967 101 - 1
CCACUUGUUUAUGGCUUUGUUUGCACUUUUGUUUAUGGGUGUACAUUUUAAACGCUAUGUGCACCUGGCUCUUCAGCAAAGGCUCGCCUUC-CUCGCUUUGU-----
............(((..(.(((((......(((...((((((((((..........)))))))))))))......))))).)...)))...-..........----- ( -22.30)
>DroEre_CAF1 54613 91 - 1
CCUCUUGUUUAUGGCUUUGUUUGCACUUUUGUUUAUGGGUGUACAUUUUAAACGCUAUGAGCACCUGCUCCGCCAUCAUG-----------UGUGGCUGCUU-----
.....((((((((((((((..(((((((........))))))).....)))).))))))))))...((...(((((....-----------.))))).))..----- ( -24.80)
>DroYak_CAF1 61737 91 - 1
CCUCUUGUUUAUGGCUUUGUUUGCACUUUUGUUUAUGGGUGUACAUUUUAAACGCUAUGAGCACCUGCUCCGCCAUCAUG-----------UGUGGCUGCUU-----
.....((((((((((((((..(((((((........))))))).....)))).))))))))))...((...(((((....-----------.))))).))..----- ( -24.80)
>DroAna_CAF1 55637 96 - 1
CCCUUUGUUUAUGGCUUUGUUUGCACUUUUGUUUAUGGGUGUACAUUUUAAACGCUAUGAGCACCUGGUCCGCCAUCAUG-----------UGUGGCUCUUUGUGAG
.((..((((((((((((((..(((((((........))))))).....)))).))))))))))...))...(((((....-----------.))))).......... ( -25.40)
>DroPer_CAF1 78640 102 - 1
CCACUUGUUUAUGGCUUUGUUUGCACUUUUGUUUAUGGGUGUACAUUUUAAACGCUAUGUGCACCUGGCUCUUCAGCAAAGGCUCUCCCUCUCUCGCUUUGU-----
............(.(((((((.((((....))....((((((((((..........)))))))))).)).....))))))).)...................----- ( -20.70)
>consensus
CCUCUUGUUUAUGGCUUUGUUUGCACUUUUGUUUAUGGGUGUACAUUUUAAACGCUAUGAGCACCUGCUCCGCCAUCAUG___________UGUGGCUGCUU_____
.....((((((((((((((..(((((((........))))))).....)))).))))))))))...((...(((((................))))).))....... (-18.28 = -17.81 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:26 2006