Locus 5902

Sequence ID 3R_DroMel_CAF1
Location 15,519,076 – 15,519,178
Length 102
Max. P 0.927543
window9643

overview

Window 3

Location 15,519,076 – 15,519,178
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 97.48
Mean single sequence MFE -35.36
Consensus MFE -33.12
Energy contribution -33.28
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.49
Structure conservation index 0.94
SVM decision value 1.18
SVM RNA-class probability 0.927543
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15519076 102 - 27905053
ACACAUAUCCCCAAAAUGUACACCU-UCGGGGGAGGGGCAGCGGAGGCAGGUGCUAAAGCAAUUUCCGCUCCGAAAUUGUUGCAUAAGUUGGUGGCUGCCAGU
.......(((((..((.(....).)-)..)))))..((((((.(.(((..((((...(((((((((......)))))))))))))..)))..).))))))... ( -35.60)
>DroSec_CAF1 53236 103 - 1
ACACAUAUCCCCAAAAUGUACACCUUUCGGGGGAGGGGCAGCGGAGGCAGGUGCUAAAGCAAUUUCCGCUCCGAAAUUGUUGCAUAAGUUGGUGGCUGCCAGU
.......(((((.(((.(....).))).)))))...((((((.(.(((..((((...(((((((((......)))))))))))))..)))..).))))))... ( -35.10)
>DroSim_CAF1 47184 103 - 1
ACACAUAUCCCCAAAAUGUACACCUUUCGGGGGAGGGGCAGCGGAGGCAGGUGCUAAAGCAAUUUCCGCUCCGAAAUUGUUGCAUAAGUUGGUGGCUGCCAGU
.......(((((.(((.(....).))).)))))...((((((.(.(((..((((...(((((((((......)))))))))))))..)))..).))))))... ( -35.10)
>DroEre_CAF1 43403 103 - 1
ACACAUAUACCCAAAAUGCACACCUUUCGGGGGCGGGGCGGCGGAGGCAGGUGCUAAAGCAAUUUCCGCUCCGAAAUUGUUGCAUAAGUUGGUGGCUGCCAGU
.........(((((.(((((((..((((((((.(((((..((...(((....)))...))...))))))))))))).)).)))))...)))).)......... ( -32.50)
>DroYak_CAF1 50062 103 - 1
ACACAUAUCCCCAAAAUGUACACCUUUUGGGGGAGGGGCGGCGGAGGCAGGUGCUAAAGCAAUUUCCGCUCCGAAAUUGUUGCAUAAGUUGGUGGCUGCCAGU
.......(((((((((.(....).)))))))))...((((((.(.(((..((((...(((((((((......)))))))))))))..)))..).))))))... ( -38.50)
>consensus
ACACAUAUCCCCAAAAUGUACACCUUUCGGGGGAGGGGCAGCGGAGGCAGGUGCUAAAGCAAUUUCCGCUCCGAAAUUGUUGCAUAAGUUGGUGGCUGCCAGU
.......(((((.(((.(....).))).)))))...((((((.(.(((..((((...(((((((((......)))))))))))))..)))..).))))))... (-33.12 = -33.28 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:23 2006