| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,515,761 – 15,515,852 |
| Length | 91 |
| Max. P | 0.923437 |
| Location | 15,515,761 – 15,515,852 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 71.58 |
| Mean single sequence MFE | -23.97 |
| Consensus MFE | -5.61 |
| Energy contribution | -6.87 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.23 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.923437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15515761 91 - 27905053 AGAGGAGGUCAUCAAAGUUGAUGCCUCCGUGUGGUGGGUGGACAAAAAGAAAGUAAAUACA--C-----UGCUGGUUCACCAUCACAUAACAUAAAGC ...(((((.(((((....))))))))))(((((((((.(((((....((..(((......)--)-----).)).)))))))))))))).......... ( -34.10) >DroSec_CAF1 49985 72 - 1 AGAGGAGGUCAUCAAAGUUGAUGC------------------A-AAAAAAAAGCAAAUACA--C-----UGCUGGUUUACCAUCACAUAACAUAAGGC .((((..(.(((((....))))))------------------.-..(((..((((......--.-----))))..))).)).)).............. ( -10.60) >DroSim_CAF1 43904 90 - 1 AGAGGAGGUCAUCAAAGUUGAUGCCUCCGUGUGGUAGGUGGAC-AAAAAAAAGAAAAUACA--C-----UGCUGGUUUACCAUCACAUAACAUAAAGC ...(((((.(((((....))))))))))(((((((.(((((((-.......((........--)-----)....)))))))))))))).......... ( -30.00) >DroEre_CAF1 40324 87 - 1 AGAGGAGGUCAUCAAAGUUGAUGCCGCCGUGCGGUAGGUGGAC-AAA---AAGUAAACACA--C-----UGCUGGUUUACCAUCCCAUAACAUAAGGC ...((.((.(((((....))))))).))(((.((..(((((((-...---.((((......--.-----)))).)))))))..))))).......... ( -24.80) >DroYak_CAF1 46695 90 - 1 AGAGAAGGCCAUCAAAGUUGAUGCCUCCGUGUGGUAGGUGGAC-AAAAAAAAAUAAACGCU--C-----UGCUGGUUUACCAUCACAUAGCAUAAACC ...(.((((.((((....)))))))).)(((((((.(((((((-.................--.-----.....)))))))))))))).......... ( -22.20) >DroPer_CAF1 58326 84 - 1 GGAGGUGGCCAUCAAAGUUGACAUCUCUGUAUUACAAAUGGGA--UAAAUAAGGAUAUAUAUGCUUUUGUGAUGGUUUA---UCCCAUG--------- (((((((..((.......)).))))))).........((((((--(((((.....((((........))))...)))))---)))))).--------- ( -22.10) >consensus AGAGGAGGUCAUCAAAGUUGAUGCCUCCGUGUGGUAGGUGGAC_AAAAAAAAGUAAAUACA__C_____UGCUGGUUUACCAUCACAUAACAUAAAGC ...((.((.(((((....))))))).))..........................................(.(((....))).).............. ( -5.61 = -6.87 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:22 2006