Locus 5900

Sequence ID 3R_DroMel_CAF1
Location 15,513,477 – 15,513,569
Length 92
Max. P 0.543328
window9641

overview

Window 1

Location 15,513,477 – 15,513,569
Length 92
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 76.04
Mean single sequence MFE -21.48
Consensus MFE -14.70
Energy contribution -15.32
Covariance contribution 0.63
Combinations/Pair 1.29
Mean z-score -1.48
Structure conservation index 0.68
SVM decision value 0.02
SVM RNA-class probability 0.543328
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15513477 92 + 27905053
UGUGUCUAGUUAAAAUACGCUCUGUC----ACUUCGAUUUUUAUUUCGACUUUGGAAAAGCCAAUUUAUAAGUUCGUAUGAUAGAGCGGAUUGGCU
.......((((((....(((((((((----(...(((..(((((.......((((.....))))...))))).)))..))))))))))..)))))) ( -24.60)
>DroSec_CAF1 47725 96 + 1
UGUGUCUGGUUAAAAAACGCUCUGUCAGGCACUUCGAUUUUUAUUUCGGCUUUGGAAAAACCAAUUUACAAGUUCGUAUGGUAGAGCGAAUUGGCU
.......((((((....((((((..((.((...((((........))))..((((.....))))...........)).))..))))))..)))))) ( -22.00)
>DroSim_CAF1 41684 96 + 1
UGUGUCUGGUUAAAAAACGCUCUGUCAGGCACUUCGAUUUUUAUUUCGACUUUGGAAAACCCAAUUUACAAGUUCGUAUGAUAGAGCGAAUUGGCU
.......((((((....((((((((((.((...((((........))))..((((.....))))...........)).))))))))))..)))))) ( -25.90)
>DroYak_CAF1 44538 84 + 1
UUUGCAUGGUGUUAAAACGCUUUGCCAAACACUGCGAUUUUUAUUUCAUCAA-----U-------UAACAAAUUUGAAUAACAGAGCGAAUUUUCU
(((((.(((((.((((((((..((.....))..)))..)))))...))))).-----.-------.......((((.....)))))))))...... ( -13.40)
>consensus
UGUGUCUGGUUAAAAAACGCUCUGUCAGGCACUUCGAUUUUUAUUUCGACUUUGGAAAA_CCAAUUUACAAGUUCGUAUGAUAGAGCGAAUUGGCU
.......((((((....((((((((((......((((........))))..((((.....))))..............))))))))))..)))))) (-14.70 = -15.32 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:21 2006