Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 331,148 – 331,268 |
Length | 120 |
Max. P | 0.924623 |
Location | 331,148 – 331,268 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.17 |
Mean single sequence MFE | -51.05 |
Consensus MFE | -17.57 |
Energy contribution | -17.68 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.39 |
Mean z-score | -2.42 |
Structure conservation index | 0.34 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 331148 120 - 27905053 GAGAUUGAGCGAAAGAGAUGCGCCCGCCUGGCGGAGUGGGAGGCGGAGAAGGCGAACCACGUGGCCUUCUGCAGGGAAACGCAACGGUUAGAAGCCGAAGCUCUGGCCAAUAUCGCCCAG .....((.((((....(.(((((((((((..(.....)..))))))(((((((.(......).)))))))))..(....)))).)(((((((.((....)))))))))....)))).)). ( -45.20) >DroPse_CAF1 8896 120 - 1 GAGAUCCAUCGCCGCAGGUGCGAAAAGCUGGCCAUAUGGGAGGCCGAAAAGGCCGAGCAUGCCGCCUUCUGUCGCGAAACAGAGCGCCUGGAGGCGGAGGCCAGAGAGAAGAUCGCCCAA ..((((..((..(((....))).....((((((.((((...((((.....))))...))))((((((((.(.(((........))).).)))))))).)))))).))...))))...... ( -52.20) >DroEre_CAF1 11464 120 - 1 GAGAUCGAGCGAAAAAGAUGCGCCCGCCUGGCGGACUGGGAGUCGGAGAAGAAUGACCACAUGGCCUUCUGCCGGGAAACGCAACGGUUGGAAGCCGAGGCUCUGGCCAAGAUCGCUCAG ......((((((....(.((((....(((((((((..(((.((((........)))).......))))))))))))...)))).)(((..((.((....))))..)))....)))))).. ( -48.60) >DroYak_CAF1 10766 120 - 1 GAGAUCGAGCGAAAAAAAUGCGCCCGCCUGACGGAGUGGGAGGUGGACAAGGCAGACCACAUGGCCUUCUGCCGGGAAACGCAACGAUUGCAGGCCGAAGGCCUGGCCAAGAUUGCUCAG ......((((((.........(.((((((..(.....)..)))))).)..(((.........(((((((.(((.(....)(((.....))).))).)))))))..)))....)))))).. ( -46.30) >DroAna_CAF1 15468 120 - 1 GAGAUCGAGCGGAAGCGGUGCGCCCGCCUCAAGGAGUGGGAGGAAGAGAAGGCCGAGCACUUGGCCUUCUGCCGGGAGACCCAGCGCCUGGAGGCGGAGGCCCGCGAGAAGAUCGAAAAG ..((((...(....((((.((..(((((((.(((.((.(..((...((((((((((....)))))))))).))((....))).)).))).)))))))..))))))..)..))))...... ( -60.70) >DroPer_CAF1 8881 120 - 1 GAGAUCCAUCGCCGCAAGUGCGCCAAGCUGGCCAUAUGGGAGGCCGAAAAGGCCGAGCAUGCCGCCUUCUGUCGCGAAACAGAGCGCCUGGAGGCGGAGGCCAGAGAGAAGAUCGCCCAA ..((((..(((((....).))......((((((.((((...((((.....))))...))))((((((((.(.(((........))).).)))))))).)))))).))...))))...... ( -53.30) >consensus GAGAUCGAGCGAAAAAGAUGCGCCCGCCUGGCGGAGUGGGAGGCGGAGAAGGCCGACCACGUGGCCUUCUGCCGGGAAACGCAACGCCUGGAGGCCGAGGCCCGGGACAAGAUCGCCCAG ..((((..((.........................(((...(((.......)))...))).((((((((.(.((..........)).).))))))))........))...))))...... (-17.57 = -17.68 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:41 2006