Locus 5899

Sequence ID 3R_DroMel_CAF1
Location 15,507,068 – 15,507,163
Length 95
Max. P 0.514378
window9640

overview

Window 0

Location 15,507,068 – 15,507,163
Length 95
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 80.27
Mean single sequence MFE -17.30
Consensus MFE -12.02
Energy contribution -13.47
Covariance contribution 1.45
Combinations/Pair 1.10
Mean z-score -1.16
Structure conservation index 0.70
SVM decision value -0.04
SVM RNA-class probability 0.514378
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15507068 95 - 27905053
GCCCGAUUUUAUUUUAAUCUUCAUUGAAAUCGCACUCGACUACGGCUUCCCCAGGGGAAAGUGACCCUCCUUGGCCCAUCGACC--------AUCCAAUAUCC
...((((((((.............))))))))...((((....((((.....((((........))))....))))..))))..--------........... ( -19.32)
>DroSec_CAF1 41427 95 - 1
GUCCGAUUUUAUUUUAAUCUUCAUUGAAAUCGCACUCGACUUCGGCUUCCCCAGGGGAAAGUGACCCUCCUUGGCCCAUCGACU--------AUCCAAUAUCC
((.((((((((.............)))))))).))((((....((((.....((((........))))....))))..))))..--------........... ( -20.92)
>DroSim_CAF1 35333 95 - 1
GCCCGAUUUUAUUUUAAUCUUCAUUGAAAUCGCACUCGACUACGGCUUCCCCAGGGGAAAGUGACCCUCCUUGGCCCAUCGACC--------AUCCAAUAUCC
...((((((((.............))))))))...((((....((((.....((((........))))....))))..))))..--------........... ( -19.32)
>DroEre_CAF1 32378 95 - 1
GCCCGAUUCUAUUUUAAUCUUCAUUGAAAUCGCACUCGACUACGGCUUCCCCAGGGGAAAGUGACCCUCCUUGGCCCGUCGACC--------GUCCAAUAUCC
(..((.....((((((((....)))))))).....(((((...((((.....((((........))))....)))).))))).)--------)..)....... ( -19.90)
>DroYak_CAF1 38354 103 - 1
GUCCGAUUUUAUUUUAAUCUUCAUUGAAAUCGCACUCGACUACGGCUUCCCCAGGGAAAAGUGACCCUCCUUGGCCCAUCGACCAAUAUCCAAUCCAAUAUCC
((.((((((((.............)))))))).))((((....((((.....((((........))))....))))..))))..................... ( -19.62)
>DroAna_CAF1 31795 72 - 1
---CGUUUUUUUUUUAAUCUUCAUUGAAAUCGCUGACGACUUUGCCUUCCUUAUACAAAACUAAGCAUUCUU----------------------------UUU
---((((....(((((((....))))))).....))))..................................----------------------------... (  -4.70)
>consensus
GCCCGAUUUUAUUUUAAUCUUCAUUGAAAUCGCACUCGACUACGGCUUCCCCAGGGGAAAGUGACCCUCCUUGGCCCAUCGACC________AUCCAAUAUCC
...((((((((.............))))))))...((((....((((.....((((........))))....))))..))))..................... (-12.02 = -13.47 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:20 2006