Locus 5898

Sequence ID 3R_DroMel_CAF1
Location 15,506,923 – 15,507,030
Length 107
Max. P 0.668284
window9639

overview

Window 9

Location 15,506,923 – 15,507,030
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 88.80
Mean single sequence MFE -16.73
Consensus MFE -14.43
Energy contribution -14.71
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -1.62
Structure conservation index 0.86
SVM decision value 0.29
SVM RNA-class probability 0.668284
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15506923 107 - 27905053
CGGGUUAAUAUGGAAGCCAUCCACACACAAUUACCCAUAAGAACCCUUUUGGCAUUACACCAGCUCUGCUCAAAGGCCAUGAACACCACAUCCACAUCCUCAUCCUC
.(((((..(((((.....................)))))..)))))...((((.......((....)).......))))............................ ( -16.54)
>DroSec_CAF1 41288 101 - 1
CGGGUUAAUGUGGAAGCCAUCCACACACAAUUACCCAUAAGAACCCUUUUGGCAUUACACCAGCUCUGCUCAAAGGCCAUGAACACCACAUCCACAUCCU------C
.((((...((((((.....)))))).......))))........(((((.((((............)))).)))))........................------. ( -19.80)
>DroSim_CAF1 35194 101 - 1
CGGGUUAAUAUGGAAGCCAUCCACACACAAUUACCCAUAAGAACCCUUUUGGCAUUACACCAGCUCUGCUCAAAGGCCAUGAACACCACAUCCACAUCCU------C
.(((((..(((((.....................)))))..)))))...((((.......((....)).......)))).....................------. ( -16.54)
>DroEre_CAF1 32236 95 - 1
CGGGUUAAUAUGGAAGCCAUCCACACACAAUUACCCAUAAGAACCCUUUUGGCAUUACACCAGCUCUGCUCAAAGGCCAUGAACAGCACA------UCCU------C
.(((((..(((((.....................)))))..)))))...((((.......((....)).......))))...........------....------. ( -16.54)
>DroYak_CAF1 38221 95 - 1
CGGGUUAAUAUGGAAGCCAUCCACACACAAUUACCCAUAAGAACCCUUUUGGCAUUACACCAGCUCUGCUCAAAGGCCAUGACCACCACA------UCCU------C
.(((((..(((((.....................)))))..)))))...((((.......((....)).......))))...........------....------. ( -16.54)
>DroAna_CAF1 31676 88 - 1
---G-UUAUGUGGAAGCCAUCCACACCCAAUUACCCAUAAGAACCCU-UUGGCAUUACACCAGCUCUGUUCAAAGGCCAUGAAC--CUCG------CCCA------C
---.-...((((((.....))))))...............((((...-((((.......))))....))))...(((.......--...)------))..------. ( -14.40)
>consensus
CGGGUUAAUAUGGAAGCCAUCCACACACAAUUACCCAUAAGAACCCUUUUGGCAUUACACCAGCUCUGCUCAAAGGCCAUGAACACCACA______UCCU______C
.(((((..(((((.....................)))))..)))))...((((.......((....)).......))))............................ (-14.43 = -14.71 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:19 2006