Locus 5897

Sequence ID 3R_DroMel_CAF1
Location 15,499,284 – 15,499,376
Length 92
Max. P 0.809740
window9638

overview

Window 8

Location 15,499,284 – 15,499,376
Length 92
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 81.15
Mean single sequence MFE -26.02
Consensus MFE -19.44
Energy contribution -19.72
Covariance contribution 0.28
Combinations/Pair 1.20
Mean z-score -1.79
Structure conservation index 0.75
SVM decision value 0.64
SVM RNA-class probability 0.809740
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15499284 92 + 27905053
UUGCACAACAAUUAAAGCAACAAUUACUGGACAAACCGGACGGCAGACGCCGGACUUAGCGUUGUUGUGCUGCGCC---AUAGUAC---AUG---------GAAAA----U
..((((((((((....((........((((.....)))).((((....))))......))))))))))))....((---((.....---)))---------)....----. ( -28.30)
>DroSec_CAF1 33685 92 + 1
UUGCACAACAAUUAAAGCAACAAUUACUGGACAAACCGGACGGCAGACGCCGGACUUUGCGUUGUUGUGCUGCGCC---AUAGAAC---AUG---------GAAAA----U
..((((((((((((((((........((((.....)))).((((....))))).))))).))))))))))....((---((.....---)))---------)....----. ( -30.00)
>DroSim_CAF1 27319 92 + 1
UUGCACAACAAUUAAAGCAACAAUUACUGGACAAACCGGACGGCAGACGCCGGACUUGGCGUUGUUGUGCUGCGCC---AUAGUAC---AUG---------GAAAA----U
..((((((((((..((((........((((.....)))).((((....))))).)))...))))))))))....((---((.....---)))---------)....----. ( -28.80)
>DroEre_CAF1 24836 91 + 1
UUGCACAACAAUUAAAGCAACAAUUACUGGACAAACCGGACAGCAGACGCCGGACCCGGCGUUCUUCUGCUGCGCC---ACAGUAC---AUG---------GAAA-----C
((((............))))((..((((((......)((.((((((((((((....)))))....)))))))..))---.))))).---.))---------....-----. ( -27.30)
>DroYak_CAF1 30400 96 + 1
UUGCACAACAAUUAAAGCAACAAUUACUGGACAAACCGGACGGCAGACGUUGGACUUAGCGUUGUUGUGCUGCGCC---AUAGUAC---ACG---------GAAAACGCAC
..((((((((((....((........((((.....)))).((((....))))......))))))))))))((((((---.......---..)---------)....)))). ( -23.90)
>DroAna_CAF1 23885 103 + 1
UUGCACAACAAUUAAAGCUACAAUUACUGGACA-GCUGGACGUU---UGUUGGAUUUUGCGUUGUUUUGCUUUGCUUUCAAUGUACUCUAUGUACGACAAUAACGG----U
.....((((((....((((.((.....))...)-)))......)---))))).......(((((((..((...))......(((((.....)))))..))))))).----. ( -17.80)
>consensus
UUGCACAACAAUUAAAGCAACAAUUACUGGACAAACCGGACGGCAGACGCCGGACUUAGCGUUGUUGUGCUGCGCC___AUAGUAC___AUG_________GAAAA____U
..((((((((((....((........((((.....)))).((((....))))......))))))))))))......................................... (-19.44 = -19.72 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:18 2006