Locus 5896

Sequence ID 3R_DroMel_CAF1
Location 15,487,968 – 15,488,071
Length 103
Max. P 0.630407
window9637

overview

Window 7

Location 15,487,968 – 15,488,071
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 77.57
Mean single sequence MFE -21.56
Consensus MFE -15.46
Energy contribution -15.52
Covariance contribution 0.06
Combinations/Pair 1.29
Mean z-score -1.06
Structure conservation index 0.72
SVM decision value 0.20
SVM RNA-class probability 0.630407
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15487968 103 + 27905053
AUUUAUAGAUAAUAUUUAAAUCUAAAACCUUUUUUUUAGUGUCCCACACCACGGAUGACUUGAUAUUCCAGUGGGAUCCAACAACGCCCCUUGUGGUUGAUGA
.....(((((.........))))).((((.........(..((((((.....(((...........))).))))))..).((((......))))))))..... ( -17.50)
>DroSec_CAF1 21211 100 + 1
AUUUUUAGAUAAUAUUUAAAUUUAAAC-CU-UU-UUUAGUGUCCCACACCACGGAUGACUUGAUUUUCCAGUGGGAUCCCACCACGCCCCUUGUGGUGGACGA
...(((((((.........))))))).-..-..-....(((((((((.....(((...........))).))))))).((((((((.....)))))))))).. ( -23.80)
>DroSim_CAF1 15860 101 + 1
AUUUUUAGAUAAUAUUGAAAUUUAAAC-CU-UUUUUUAGUGUCCCACACCACGGAUGACUUGAUAUUCCAGUGGGAUCCCACCACGCCCCUUGUGGUGGACGA
............((((((((.......-..-..))))))))((((((.....(((...........))).))))))..((((((((.....)))))))).... ( -24.40)
>DroEre_CAF1 13120 102 + 1
GUUUUUAGACACUAUUUAAAUUCCAAC-CCCCCUUCCAGUGUCACACACCACAGACGACUUGAUAUUCCAGUGGGAUCCCACCACGCCCCUGGUGGUGGACGA
(((....))).........((((((..-......((.((((((..........))).))).))........)))))).(((((((.......))))))).... ( -22.59)
>DroYak_CAF1 16504 102 + 1
GCUUUUGCAUAAUAUAUAAAUUUAAAC-CCCUCUUCCAGUGUCACACACCACAGACGACUUAAUAUUCCAGUGGGAUCCUACCACGCCCCUUGUGGUGGACGA
((....))...................-...........((((...((((((((..((........))..((((.......)))).....)))))))))))). ( -19.30)
>DroMoj_CAF1 98915 80 + 1
---------------------U-AAUU-CCCUUUGUCAGUAUCUCACACAACGGAUGAUUUGAUCUUUCAAUGGGAUCCCACCACGCCGCUGGUGGUGGACGA
---------------------.-...(-(((.(((..((.(((((((......).)))...)))))..))).))))..(((((((.......))))))).... ( -21.80)
>consensus
AUUUUUAGAUAAUAUUUAAAUUUAAAC_CCCUUUUUCAGUGUCCCACACCACGGAUGACUUGAUAUUCCAGUGGGAUCCCACCACGCCCCUUGUGGUGGACGA
........................................(((((((.......................))))))).(((((((.......))))))).... (-15.46 = -15.52 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:17 2006