Locus 5894

Sequence ID 3R_DroMel_CAF1
Location 15,476,751 – 15,476,862
Length 111
Max. P 0.517212
window9634

overview

Window 4

Location 15,476,751 – 15,476,862
Length 111
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 81.60
Mean single sequence MFE -22.92
Consensus MFE -18.83
Energy contribution -19.28
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.26
Structure conservation index 0.82
SVM decision value -0.03
SVM RNA-class probability 0.517212
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15476751 111 - 27905053
UAUUCACAGUCGUAUUCAAUUUUAUUCCGCACGCUAAUUACCAGAAUUCGUUGAAUGGGCCAAUUGAAUGAAUACUACUACGAGUGCGAACGGAAUGCAUGAAAUGAACAU
.........((((.((((....(((((((..(((........((.(((((((.(((......))).))))))).)).........)))..)))))))..)))))))).... ( -23.43)
>DroSec_CAF1 8982 92 - 1
----CACAGUCGGAUUCGAUUUUAUUCCGCACGCUAAUUACCAAAUUUCGUUGAAUAUGAAAAUUGAAUGAA------------UGCGAACGGAAUGCA---AGUGAACAU
----((((((((....))))).(((((((..(((.......(((.((((((.....)))))).)))......------------.)))..)))))))..---.)))..... ( -22.24)
>DroSim_CAF1 4192 104 - 1
----CACAGUCGGAUUCGAUUUUAUUCCGCACGCUAAUUACCAAAUUUCGUUGAAUAUGAAAGUUGAAUGAAUAGGACUACGAGUGCGAACGGAAUGCA---AGUGAACAU
----((((((((....))))).(((((((..(((......((....((((((.(((......))).))))))..))((.....)))))..)))))))..---.)))..... ( -23.10)
>consensus
____CACAGUCGGAUUCGAUUUUAUUCCGCACGCUAAUUACCAAAUUUCGUUGAAUAUGAAAAUUGAAUGAAUA__ACUACGAGUGCGAACGGAAUGCA___AGUGAACAU
....((((((((....))))).(((((((..(((............((((((.(((......))).)))))).............)))..)))))))......)))..... (-18.83 = -19.28 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:14 2006