Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,192,533 – 2,192,653 |
Length | 120 |
Max. P | 0.736871 |
Location | 2,192,533 – 2,192,653 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.28 |
Mean single sequence MFE | -48.38 |
Consensus MFE | -26.38 |
Energy contribution | -26.97 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.29 |
Mean z-score | -1.77 |
Structure conservation index | 0.55 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2192533 120 - 27905053 ACCAGGAUCAGGGCCGCCGGGAUUUGAUCCGCAUGCUGCUUUUGCGGCUGCUGCUGCAGCAAUGAAAGCCAAUUCGGAAAACACUAAGGCUGCACAGGCAGCUGCUUUGGAGAAAGAGGC .(((((((((((.((....)).))))))))(((.(((((((.(((.(((((....)))))......((((.................))))))).))))))))))..))).......... ( -48.13) >DroVir_CAF1 12262 117 - 1 GCCGGGUGCUGC---ACCUGGCUUUGAUCCGCAAAUGGCAUUCGCAGCCGCUGCGGCAGCCAUGAAGGCUAACAGUGAAAACAACAAGGCUGCACAGGCCGCAGUGCUGGAGAAGGAGGC ((((((((...)---))))))).....(((.....(((((((.((.(((..((((((((((.....))))....((....))......))))))..))).))))))))).....)))... ( -50.30) >DroPse_CAF1 15750 120 - 1 UCCGGGCACGGCGCCACCGGGAUUUGAUCCCCAAAUGGCGUAUGCGGCAGCUGCCGCCGCCAUGAAAGCGAACACCGAGAGUGCAAAGGCAUCGCAGGCAGCCGCCUUGGAAAAGGAGGC .(((....))).(((...(((((...)))))...((((((...(((((....)))))))))))....((((....(....)(((....))))))).))).(((.((((....)))).))) ( -49.70) >DroYak_CAF1 11172 120 - 1 ACCGGGAUCAGCGCCGCCAGGAUUUGAUCCGCAUGCCGCUUUUGCGGCUGCUGCUGCAGCAAUGAAAGCGAAUUCAGAAAACACCAAGGCUGCGCAGGCAGCUGCUUUGGAGAAAGAGGC ....(((((((..((....))..)))))))....(((.((((((((((((((((.(((((..((((......))))............)))))))).))))))))......))))).))) ( -46.44) >DroAna_CAF1 20043 120 - 1 UCCAGGCUCAGCUCCCCCCGGAUUUGAUCCGCAUGCAGCUUUUGCAGCAGCUGCCGCCGCCAUGAAAGCCAACACGGAGAACUCAAAGGCGGCUCAGGCGGCCGCUCUGGAGAAGGAAGC (((((((..((((.(...(((((...)))))...).))))...))(((.((((((((((((.(((...((.....)).....)))..))))))...)))))).))))))))......... ( -46.10) >DroPer_CAF1 11708 120 - 1 UCCGGGCACGGCGCCACCGGGAUUUGAUCCCCAAAUGGCGUACGCGGCAGCUGCCGCCGCCAUGAAAGCGAACACCGAGAGUGCAAAGGCAUCGCAGGCAGCCGCCUUGGAAAAGGAGGG ((((((..(((((((...(((((...)))))...((((((...(((((....)))))))))))....((((....(....)(((....))))))).))).)))).))))))......... ( -49.60) >consensus UCCGGGCUCAGCGCCACCGGGAUUUGAUCCGCAAACGGCUUUUGCGGCAGCUGCCGCAGCCAUGAAAGCGAACACCGAAAACACAAAGGCUGCGCAGGCAGCCGCUUUGGAGAAGGAGGC (((.((..........)).)))(((..(((.......((....))(((.((((((((((((..........................))))))...)))))).)))..)))..))).... (-26.38 = -26.97 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:52 2006