Locus 5888

Sequence ID 3R_DroMel_CAF1
Location 15,456,070 – 15,456,163
Length 93
Max. P 0.720176
window9616

overview

Window 6

Location 15,456,070 – 15,456,163
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 74.15
Mean single sequence MFE -28.23
Consensus MFE -15.18
Energy contribution -15.52
Covariance contribution 0.34
Combinations/Pair 1.25
Mean z-score -1.67
Structure conservation index 0.54
SVM decision value 0.40
SVM RNA-class probability 0.720176
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15456070 93 + 27905053
ACUGGAA-------ACUCGGAACUCGGCAUGGGAUGUCUUCGAGGGACUUUCGGUGGGGGUCAACUCUAUUUAUAGAGCUGCUCAAGGACGG-CGGAAAAU
.((((..-------..))))...((.((......((((((.(((.((((..(...)..))))..(((((....)))))...))).)))))))-).)).... ( -22.90)
>DroPse_CAF1 14466 78 + 1
-------------------GAACUUGACAUCG-CUGUCUUUGAGGGGUUC-UGCAGGGGG--AAUUCUAUUUAUAGAAUAACUCAAGGACAGUCACAAUAU
-------------------............(-(((((((((((..((((-((.(((.((--....)).))).))))))..))))))))))))........ ( -26.40)
>DroSec_CAF1 11600 92 + 1
ACUGGGA-------ACUCGGAACUCGACAUGGGAUGUCUUCGAGGGACUU-CAUGGGGGGUCAGCUCUAUUUAUAGAGCGGCUCAAGGACAU-CGGAAAAU
.((((..-------..))))............((((((((.(((.(((((-(....)))))).((((((....))))))..))).)))))))-)....... ( -31.10)
>DroSim_CAF1 12941 92 + 1
ACUGGGA-------ACUCGGAACUCGACAUGGGAUGUCUUCGAGGGACUU-CGCGGGGGGUCAGCUCUAUUUAUAGAGCGGCUCAAGGACAU-CGGAAAAU
.((((..-------..))))............((((((((.(((.(((((-(....)))))).((((((....))))))..))).)))))))-)....... ( -31.30)
>DroEre_CAF1 12404 97 + 1
ACUGGCAACUCGGAACUCGGAACCCAACAUCGAAUGUCUUUGAGGGACUA-C--AGGGGGUCAGCUCUAUUUAUAGAGCUGCUCGAGGACAG-CGGAAAAU
..(((....((.(....).))..)))...(((..((((((((((.((((.-.--....))))(((((((....))))))).)))))))))).-)))..... ( -30.10)
>DroYak_CAF1 12626 83 + 1
--------------ACUUGGAACCCCACAUCGAAUGUCUUCGAGGGACUA-C--GGGGGCCCAGUUCUAUUUAUAGAACUGCACGAGGACAG-CGGAAAAG
--------------...(((....)))..(((..((((((((.(((.(..-.--.)...)))(((((((....)))))))...)))))))).-)))..... ( -27.60)
>consensus
ACUGG_A_______ACUCGGAACUCGACAUCGGAUGUCUUCGAGGGACUU_CG_GGGGGGUCAGCUCUAUUUAUAGAGCUGCUCAAGGACAG_CGGAAAAU
..................................((((((.(((.(((((.......))))).((((((....))))))..))).)))))).......... (-15.18 = -15.52 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:56 2006