Locus 5887

Sequence ID 3R_DroMel_CAF1
Location 15,455,158 – 15,455,267
Length 109
Max. P 0.700347
window9615

overview

Window 5

Location 15,455,158 – 15,455,267
Length 109
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 74.02
Mean single sequence MFE -27.33
Consensus MFE -13.87
Energy contribution -13.77
Covariance contribution -0.11
Combinations/Pair 1.14
Mean z-score -2.20
Structure conservation index 0.51
SVM decision value 0.35
SVM RNA-class probability 0.700347
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15455158 109 - 27905053
CAAUUAAGACUGCUGUGACACGAUAUGGUUAAAUUUAUGCAAGUUGAACUGUCGCACUUGUUUAAUAAACCCAAGUGUGUCUGCCAUAAUAAAUGCAUUUGCAGUUGCA--
.......((((((...((((((....((((....(((.(((((((((....))).)))))).)))..))))....))))))(((..........)))...))))))...-- ( -26.80)
>DroSim_CAF1 11989 109 - 1
CAAUUAAGACAGCUGUGACACGAUAUGGUUGAAUUUAUGCAAGUUGAACUGUCGCACUUGUUUAAUAAACCCAAGUGUGUCAGCCAUAAUAAUUGCAUUUGCAGUUGCA--
.......(.(((((((((((((....((((....(((.(((((((((....))).)))))).)))..))))....)))))).((.((....)).))....)))))))).-- ( -29.60)
>DroAna_CAF1 10604 99 - 1
CAAUUUAAAUACUAUUGACAAGCCAUGGG---------CCAAGUUGGACUGACGCAUUUGUUUAAUGAAAGCGAAUAUGUCGUCCACAAUAAAUGCAUGUGU---UGCAUC
............(((((....(((...))---------).....(((((.((((.((((((((.....)))))))).)))))))))))))).(((((.....---))))). ( -25.60)
>consensus
CAAUUAAGACAGCUGUGACACGAUAUGGUU_AAUUUAUGCAAGUUGAACUGUCGCACUUGUUUAAUAAACCCAAGUGUGUCAGCCAUAAUAAAUGCAUUUGCAGUUGCA__
.......................((((((............((.....))(.((((((((...........)))))))).).)))))).....((((........)))).. (-13.87 = -13.77 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:55 2006