Locus 5886

Sequence ID 3R_DroMel_CAF1
Location 15,454,150 – 15,454,241
Length 91
Max. P 0.990244
window9614

overview

Window 4

Location 15,454,150 – 15,454,241
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 68.91
Mean single sequence MFE -13.96
Consensus MFE -6.59
Energy contribution -7.32
Covariance contribution 0.72
Combinations/Pair 1.11
Mean z-score -2.35
Structure conservation index 0.47
SVM decision value 2.20
SVM RNA-class probability 0.990244
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15454150 91 + 27905053
UAUACGAUGCGUAACAGCGCAAUAACCUGAUAACAGGUAAGUACAAAGGAAA--UUAAAAAAUAGUAAUAAAAUCG------GAAUGGAAAUCAAAAGU
....((((((((....))))....(((((....)))))..............--..................))))------................. ( -14.20)
>DroGri_CAF1 23349 83 + 1
--------AAAUUGCUACGCAAAUUCCUGGUG-CAGGAAAGUA-----GCAA--UCAGAAAGGAAUAGCACAAUUAACGAUCAAACAUAAAGCAGAACU
--------..((((((((.....((((((...-)))))).)))-----))))--)............................................ ( -14.50)
>DroSec_CAF1 10419 89 + 1
UAUCCAAUGCGUAACAGCGCAAUAACCUGAUAACAGGUAAGCACAAAAGACA--UAAAA--AAAGUAAUAAAAUCG------GAAUGGAAAUCAAAAGU
..((((.(((((....)))))...(((((....)))))..............--.....--...............------...)))).......... ( -16.00)
>DroSim_CAF1 11024 90 + 1
UAUCCAAUGCGUAACAGCGCAAUAACCUGAUAACAGGUAAGUACAAAAGAAA--UAAAA-AAAAGUAAUAAAAUCG------GAAUGGAAAUCAAAAGU
..((((.(((((....)))))...(((((....)))))..............--.....-................------...)))).......... ( -16.00)
>DroEre_CAF1 10748 90 + 1
CAUGCGAUGCGUA-CAUCGCAAUAACCUGAUAACAGGUGAAUACAAAAGAAACUUUUUA--AAAAUAACAAAAUCG------GAAUGGAAAUUAAAAGU
..(((((((....-)))))))...(((((....))))).............((((((..--...((..(......)------..)).......)))))) ( -15.90)
>DroYak_CAF1 10818 89 + 1
AAUCUGAUGCGUAAUAUAGCAAAAACAUGAUAACAGGUAAAUACAAAAGAAA--UUUAA--AAAAAAACCGAAUUU------GAAGGGAAACAAAAUGU
.......(((........)))...((((.......(((.......(((....--)))..--......)))......------....(....)...)))) (  -7.16)
>consensus
UAUCCGAUGCGUAACAGCGCAAUAACCUGAUAACAGGUAAGUACAAAAGAAA__UUAAA__AAAAUAACAAAAUCG______GAAUGGAAAUCAAAAGU
.......((((......))))...(((((....)))))............................................................. ( -6.59 =  -7.32 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:54 2006