Locus 5885

Sequence ID 3R_DroMel_CAF1
Location 15,452,164 – 15,452,256
Length 92
Max. P 0.634021
window9613

overview

Window 3

Location 15,452,164 – 15,452,256
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 85.40
Mean single sequence MFE -28.70
Consensus MFE -18.66
Energy contribution -20.35
Covariance contribution 1.69
Combinations/Pair 1.08
Mean z-score -1.83
Structure conservation index 0.65
SVM decision value 0.21
SVM RNA-class probability 0.634021
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15452164 92 + 27905053
ACUUCAGUUGCAGCUCAGGUGCAAUUGACCGCCAACAACUCUAACGGCACUCCGAAGUGUGGAGUGGAGUGCACUUCUAGGGGAAGUACCGA
...(((((((((.(...).)))))))))................((((((((((..........))))))))(((((.....)))))..)). ( -28.20)
>DroSec_CAF1 8423 83 + 1
ACUGCAGUUGCAGCCCAGGUGCAUUU---------CAACUCUAACGGCACUCCGAAGUGUGGAGUGGAGUGCACUUAUAGGGGAAGUACCGA
.((((....))))(((((((((((((---------((.((((....(((((....)))))))))))))))))))))...))).......... ( -32.40)
>DroSim_CAF1 8406 83 + 1
ACUGCAGUUGCAGCUCAGGUGCAAUU---------CAACUCUAACGGCACUCCGAAGUGUGGAGUGAAGUCCACUUCUAGGGGAAGUACCGA
.((((....))))....(((((..((---------(..(((((...(((((....)))))((((((.....))))))))))))))))))).. ( -26.00)
>DroYak_CAF1 8744 86 + 1
ACUGCAGUUGCAGCUCAGGUGCAAUUGCC-CCUAACAACUCUAACGGCACUCUGAAAUGUGG-----AGUGCACUUCUACGGGAAGUACCGA
...(((((((((.(...).))))))))).-..............(((((((((.......))-----)))))(((((.....)))))..)). ( -28.20)
>consensus
ACUGCAGUUGCAGCUCAGGUGCAAUU_________CAACUCUAACGGCACUCCGAAGUGUGGAGUGGAGUGCACUUCUAGGGGAAGUACCGA
...(((((((((.(...).)))))))))................(((.(((((((((((((........))))))))....)).))).))). (-18.66 = -20.35 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:53 2006