Locus 5884

Sequence ID 3R_DroMel_CAF1
Location 15,451,473 – 15,451,565
Length 92
Max. P 0.861455
window9612

overview

Window 2

Location 15,451,473 – 15,451,565
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 92.13
Mean single sequence MFE -13.95
Consensus MFE -12.10
Energy contribution -12.54
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -1.47
Structure conservation index 0.87
SVM decision value 0.83
SVM RNA-class probability 0.861455
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15451473 92 + 27905053
GAAACACGUUGGGCGAGUCUUUCUCCACGCCAGACACAUAAAAAAUAGUGCAAAACUAAAUACUCUGACCCCCAAAUCAGAAAUCAAAAAAA
.......(((.((((.(........).)))).)))..........((((.....)))).....(((((........)))))........... ( -14.40)
>DroSec_CAF1 7756 92 + 1
GAAACACGUUGGGCGAGUCUUUCUCCACGCCAGACACAUAAAAAAUAGUGCAAAACUAAAUACUCUGACCCCCAAAUCAGAAAUCACAAAAA
.......(((.((((.(........).)))).)))..........((((.....)))).....(((((........)))))........... ( -14.40)
>DroSim_CAF1 7742 92 + 1
GAAACACGUUGGGCGAGUCUUUCUCCACGCCAGACACAUAAAAAAUAGUGCAAAACUAAAUACUCUGACCCCCAAAUCAGAAAUCACAAAAA
.......(((.((((.(........).)))).)))..........((((.....)))).....(((((........)))))........... ( -14.40)
>DroEre_CAF1 8125 85 + 1
GAAACACGUUGGGCGAGUCUUUCUCCGCGCCAGACACAUAAAAA--AGCGCAAAACUAAACGCUCUGACCCCCA-AUCGGAAAACA----AA
......(((((((.(((.....))).((((..............--.))))...................))))-).)).......----.. ( -15.06)
>DroYak_CAF1 8037 87 + 1
GAAACACGUUGGGCAAGUCUUUCUCCGCGCCAGACACAUAAAAAAUAGUGCAAAACUAAAUACUCUGACCCCCA-AUCAGAAAACA----AA
.......((((((...((((..(.....)..))))..........((((.....))))............))))-)).........----.. ( -11.50)
>consensus
GAAACACGUUGGGCGAGUCUUUCUCCACGCCAGACACAUAAAAAAUAGUGCAAAACUAAAUACUCUGACCCCCAAAUCAGAAAUCA_AAAAA
.......(((.((((.(........).)))).)))..........((((.....)))).....(((((........)))))........... (-12.10 = -12.54 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:52 2006