| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,444,836 – 15,444,939 |
| Length | 103 |
| Max. P | 0.867869 |
| Location | 15,444,836 – 15,444,939 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 76.30 |
| Mean single sequence MFE | -19.70 |
| Consensus MFE | -13.40 |
| Energy contribution | -13.35 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.867869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15444836 103 - 27905053 CCAGCUCA---CUAAGCUCCAAUUACACUCA----------U-ACAACAUGGACUUCGAUCAGAUCCUGGCCAAAUGUGGCGACUUUAAUCGCUACCAGUUCAUGAUACUCGCCCUC ..((((..---...)))).............----------.-....((((((((..(..(((...)))..)....(((((((......))))))).))))))))............ ( -22.50) >DroVir_CAF1 6016 109 - 1 -CAUCUAA---UU---CGUCAUAUACAGUCACUCAGUAAAGG-CCACAAUGGAUUUCGAUCAAAUUCUUGCCAAAUGUGGCGACUUCAAUCGCUAUCAGUUCAUGAUACUCGCACUC -.......---..---.(((...(((.........)))...(-(((((.(((.....((......))...)))..))))))))).......(((((((.....)))))...)).... ( -19.00) >DroEre_CAF1 1276 103 - 1 CCAACUCA---CUGAGCGCCAAUUACACUCA----------U-ACAACAUGGACUUCGACCAGAUUCUGGCCAAAUGUGGCGACUUUAACCGCUACCAGUUCAUGAUACUCGCCCUC ........---.((((.(.......).))))----------.-....((((((((..(.((((...)))).)....((((((........)))))).))))))))............ ( -22.90) >DroWil_CAF1 1123 87 - 1 U---------------CAUCAACUAUAA---------------GCAAAAUGGAUUUCGAUCAAAUACUUGCCAAAUGUGGCGAUUUCAAUCGUUAUCAAUUCAUGAUACUCGCCCUC .---------------............---------------........(((..((((..((...((((((....)))))).))..))))..))).................... ( -12.60) >DroYak_CAF1 1247 103 - 1 CCAACUUA---CUAGGCCCCAAUCACACUCA----------U-AAAACAUGGACUUCGAUCAGAUUCUGGCCAAAUGUGGCGACUUCAAUCGCUACCAGUUCAUGAUACUCGCCCUC ........---....................----------.-....((((((((..(..(((...)))..)....(((((((......))))))).))))))))............ ( -20.40) >DroAna_CAF1 1127 107 - 1 UCAACUCAACCCUUAGCUUCAAUUGAACGCA----------UUUCAACAUGGAUUUCGAUCAAAUUCUGGCCAAAUGUGGCGAUUUCAAUCGCUACCAGUUCAUGAUACUCGCCCUC ...............(((((....))).)).----------......((((((((..(..((.....))..)....((((((((....)))))))).))))))))............ ( -20.80) >consensus CCAACUCA___CU_AGCGCCAAUUACACUCA__________U_ACAACAUGGACUUCGAUCAAAUUCUGGCCAAAUGUGGCGACUUCAAUCGCUACCAGUUCAUGAUACUCGCCCUC ...............................................((((((((..(.(((.....))).)....(((((((......))))))).))))))))............ (-13.40 = -13.35 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:51 2006