| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,442,841 – 15,442,933 |
| Length | 92 |
| Max. P | 0.572497 |
| Location | 15,442,841 – 15,442,933 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 72.04 |
| Mean single sequence MFE | -20.18 |
| Consensus MFE | -10.21 |
| Energy contribution | -10.67 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15442841 92 + 27905053 AAUCUUGAUGAAUGAUAACUGUUGGAAAGCAGAGUUAUGGAUUCAUCAAUCACUUAUCAAUUUUGAAGACCUGAUUAACA-----------UUCA---CUUGAGGU .((((..(((((((....(((((....)))))(((((.(..((((..................))))..).)))))..))-----------))))---.)..)))) ( -21.07) >DroSim_CAF1 201040 92 + 1 AAUCUUGAUGAAUGAUAAAUGUUGAAAAGCUAAAUUUUGGAUUCAUCAAUCAUUUAUCAAUUUUGAAGACCUGAUUAUCA-----------UUCA---CUUAAGGU .(((((((((((((((((..(((....)))........((..((.((((.............)))).))))...))))))-----------))))---.))))))) ( -19.42) >DroYak_CAF1 217237 106 + 1 AGUCUUGAUUAAUGAUAAAUGUUAAAAAGCAAAGUGAUAGAUUUUAAAAUCAUUUAUCAAUAAUGAAGAGCAUAUCAUCCACGUAAUGUGGUGCAUUUUUUCAGUU ..((((.((((.(((((((((((((((..............))))))...))))))))).)))).))))(((......((((.....)))))))............ ( -20.04) >consensus AAUCUUGAUGAAUGAUAAAUGUUGAAAAGCAAAGUUAUGGAUUCAUCAAUCAUUUAUCAAUUUUGAAGACCUGAUUAUCA___________UUCA___CUUAAGGU ..((((.(.((.(((((((((((((.....(((((.....))))))))).))))))))).)).).))))..................................... (-10.21 = -10.67 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:50 2006