| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,435,671 – 15,435,773 |
| Length | 102 |
| Max. P | 0.846809 |
| Location | 15,435,671 – 15,435,773 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.22 |
| Mean single sequence MFE | -27.18 |
| Consensus MFE | -15.45 |
| Energy contribution | -16.04 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15435671 102 + 27905053 UCUAUUUUACUGGACCUCAAAACACCCAU--GGAGAUA--AGUAAGCCCAAACUUAUGUUGUGCGGCCGUCACAUUACUAAUCGGCCCAUGGGUCUAGAAAGAAUC ....((((.((((((((............--.((.(((--(((........)))))).))(((.(((((.............)))))))))))))))).))))... ( -28.02) >DroSec_CAF1 187833 104 + 1 UCUAUUUUACUGGACCCCAACACACCCAU--GGAGAUAAAAGUAAGCCCAAACUUAUGUUGUGCGGGCGUCACAUUAAUACUCGGCCCAUGGGUCUAGAAAGAAUC ....((((.((((((((((((...((...--))........(((((......)))))))))...((((................))))..)))))))).))))... ( -25.79) >DroSim_CAF1 193636 104 + 1 UCUAUUUUACUGGACCCCAAAACACCCAU--GGAGAUAAAAGUAAGCCCAAACUUAUGUUGUGCGGGCGUCACAUUAAUACUCGGCCCAUGGGUCUAGAAAGAAUC ....((((.((((((((..........((--((............((((..((.......))..))))(((............))))))))))))))).))))... ( -25.40) >DroEre_CAF1 184427 101 + 1 UCUAUUUUACUGGACCCAAGAACACCUGU--UGAGAUA--AGUAAGGGCA-ACUUAUGUUGUGCGGGCGUCACUUUAAUAAGGGGCCCAUGGGUCUAGAAGGAACU ....((((.(((((((((..(((....))--)......--.....((((.-.(((((...((((....).)))....)))))..)))).))))))))).))))... ( -33.90) >DroYak_CAF1 209728 102 + 1 UCUGUUUUACUGGACCAUAGAACACCCAU--UGAGAUA--AGUAAGGGCAAACUUAUGUUGUGCGGGCGUCACAUUAGCAAUCGGCCCAUGGGUCUAGAAAGAAUC ....((((.(((((((...((.(.(((..--(((.(((--(((........)))))).)))...))).))).(((..((.....))..)))))))))).))))... ( -26.00) >DroAna_CAF1 181851 99 + 1 AGGACUUAACAGGCCUAUUAAACUCCCAAAACAAGAUA--AGG-AGGUCAUGCCUAUGCUGGAAAUUGUUUAUGUAAGUAAACAUAGCC---GGC-AACAAGAAGC ....(((...((((........((((............--.))-)).....)))).((((((....(((((((....)))))))...))---)))-)..))).... ( -23.94) >consensus UCUAUUUUACUGGACCCCAAAACACCCAU__GGAGAUA__AGUAAGCCCAAACUUAUGUUGUGCGGGCGUCACAUUAAUAAUCGGCCCAUGGGUCUAGAAAGAAUC ....((((.((((((((........................(((((......))))).......((((................))))..)))))))))))).... (-15.45 = -16.04 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:47 2006