Locus 5879

Sequence ID 3R_DroMel_CAF1
Location 15,434,145 – 15,434,252
Length 107
Max. P 0.620440
window9606

overview

Window 6

Location 15,434,145 – 15,434,252
Length 107
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 83.11
Mean single sequence MFE -24.57
Consensus MFE -17.72
Energy contribution -18.62
Covariance contribution 0.90
Combinations/Pair 1.31
Mean z-score -1.79
Structure conservation index 0.72
SVM decision value 0.18
SVM RNA-class probability 0.620440
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15434145 107 + 27905053
AAACAACUCACAGAAUAAAUCUUCGGAUACCUUUAUGGGUAUGUUAAGGACUCCAAGACUGAGAAAGUUCACCAUUAUUCUAUUGAUCAAAUCGUGAGUUAAAA-UGA------
....((((((((((((((.((((.(.((((((....)))))).).)))).......((((.....)))).....)))))))...(((...))))))))))....-...------ ( -24.30)
>DroGri_CAF1 249651 108 + 1
GAACGAGCAGCAGAAAACCACAUCUGAUACAUUCAUGGGCAUGCUGAGGACGCCACGAUUGCGUAAAUUUACCAUCAUACUGUUCAUCAAGUCGUAAGUCGAAAACGA------
(((((..(((((.....(((....(((.....))))))...)))))...((((.......))))................))))).....(.(....).)........------ ( -19.10)
>DroSec_CAF1 186313 107 + 1
AAACAACUCACAGAAUAAAACUUCGGAUACCUUUAUGGGUAUGUUGAGGACUCCAAGACUGAGAAAGUUCACCAUUAUUCUAUUGAUCAAAUCGUGAGUUAAAA-UGA------
....((((((((((((((..((((((((((((....)))))).)))))).......((((.....)))).....)))))))...(((...))))))))))....-...------ ( -26.60)
>DroSim_CAF1 192107 107 + 1
AAACAACUCACAGAAUAAAACUUCGGAUACCUUUAUGGGUAUGUUGAGGACUCCAAGACUGAGAAAGUUCACCAUUAUUCUAUUGAUCAAAUCGUGAGUUAAAA-UGA------
....((((((((((((((..((((((((((((....)))))).)))))).......((((.....)))).....)))))))...(((...))))))))))....-...------ ( -26.60)
>DroEre_CAF1 182814 113 + 1
AAACAGCUUGCAGGAUAAAUCUUCGGACACCUUCAUGGGUAUGUUGAGGACUCCAAGACUGAGAAAGUUUACCAUUAUUCUAUUGAUCAAAUCGUGAGUUGAAA-UGGUACUAA
...(((((..((((((((.(((((((..((((....))))...))))))).....(((((.....)))))....)))))))...(((...))))..)))))...-......... ( -26.30)
>DroYak_CAF1 208218 113 + 1
AAACAACUCUCAGAAUAAAUCUUCAGAUACCUUUAUGGGUAUGUUGAGGACUCCAAGACUGAGGAAAUUUACCAUUAUUUUAUUGAUCAAAUCGUGAGUUAAAA-UGAUAUCGA
.......((((((......(((((((((((((....)))))).)))))))........)))))).........(((((((((....(((.....)))..)))))-))))..... ( -24.54)
>consensus
AAACAACUCACAGAAUAAAACUUCGGAUACCUUUAUGGGUAUGUUGAGGACUCCAAGACUGAGAAAGUUCACCAUUAUUCUAUUGAUCAAAUCGUGAGUUAAAA_UGA______
....((((((((((((((..((((((((((((....)))))).)))))).(((.......)))...........)))))))...(((...)))))))))).............. (-17.72 = -18.62 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:46 2006