Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,427,610 – 15,427,717 |
Length | 107 |
Max. P | 0.606214 |
Location | 15,427,610 – 15,427,717 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.45 |
Mean single sequence MFE | -28.63 |
Consensus MFE | -15.34 |
Energy contribution | -15.89 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.38 |
Mean z-score | -1.75 |
Structure conservation index | 0.54 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15427610 107 + 27905053 GUG-CAUUAUUUAAUGCCUUCUUUCGGUUGUAGAGUCAUUAUAACCCUCUCAUGCGAUGUGAUUAACCGGAAUAUGGAGGGCUUAGGCACUUCGCCCUUUAAGCUCUU ..(-((((....)))))....(((((((((..(((...........)))((((.....)))).)))))))))....((((((((((((.....)))...))))))))) ( -27.60) >DroSim_CAF1 185603 107 + 1 GUG-CAUUACAUAAUGUCUCCUUUCGGUUGUAGUGUCAUCAUAACCCUCUCCUGCGAUGUAAUUAACCGAAAUAUGGAGGGCUUAGGUACAUCGCCCUUUAAGCUCUU ..(-((((....)))))(((((((((((((...((.((((...............))))))..)))))))))...))))(((((((((.....)))...))))))... ( -25.36) >DroEre_CAF1 176494 107 + 1 AUG-CCCUAUUUAAUGUGUCCUUUCGGUUGCAGGGUCAUCAUAACCCUCUCGUGUGAUGUGAUCAAUCGGAACAUGGAGGGCUUGGGCACUUCGCCCUUCAAGCUCUU ..(-((((.....((((.(((..(.(((..((((((.......))))((......))))..))).)..)))))))..)))))..((((.....))))........... ( -32.20) >DroYak_CAF1 201705 107 + 1 AUG-CAUUAUUUAUUUUCCCCUUUCGGUUAUAGUGUCAUUAUAACCCUCUCAUGUGAUGUGAUUAAUCGGAAUAUGGAGGGCUUAGGCACUUCGCCCUUUAAGCUCUU ...-............(((..(((((((((..(..((((..............))))..)...)))))))))...)))((((((((((.....)))...))))))).. ( -26.04) >DroMoj_CAF1 227355 107 + 1 GUGGCAGCUCUUGAUGAUGUGUUUCUA-UUCAGCGUCAUCAUUACACUCUCCUAUGAUGUGAUCAACCGCAAUAUGGAGGGGCUGGGCACUUCGCCCUUCAAGCUGUU ..(((((((..(((((((((.......-....))))))))).....((((((.(((.((((......)))).)))))))))(..((((.....))))..).))))))) ( -38.50) >DroAna_CAF1 173304 98 + 1 AUG-UAUUUCUU---------UGUCCAUUCAAGCGUCAUCAUUACCCUCUCCUGCGAUGUCAUCAAUCGCAACAUGGAGGGUCUCGGAACCUCGCCCUUCAAGCUCUU ...-........---------...........(((...((...(((((((..((((((.......))))))....)))))))....))....)))............. ( -22.10) >consensus AUG_CAUUACUUAAUGUCUCCUUUCGGUUGUAGCGUCAUCAUAACCCUCUCCUGCGAUGUGAUCAACCGGAAUAUGGAGGGCUUAGGCACUUCGCCCUUCAAGCUCUU .....................(((((((((......((((...............))))....)))))))))..((((((((...........))))))))....... (-15.34 = -15.89 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:45 2006