| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,412,047 – 15,412,164 |
| Length | 117 |
| Max. P | 0.612861 |
| Location | 15,412,047 – 15,412,164 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.69 |
| Mean single sequence MFE | -49.28 |
| Consensus MFE | -31.00 |
| Energy contribution | -31.25 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15412047 117 - 27905053 GGAGUAGGUAUCGUCCACCAGCGUAAUGUCGCCCAGGCGGCAGUGGAGCUGCUCCUCCGACGAGGACGAGUACAGCGACAGGAUGUUGCGUCG---CCGCUCAUUGGCAACGUGUUGCAC .((((.(((.((((((..........((((((....))))))((((((......)))).))..)))))).....(((((.....)))))...)---))))))....((((....)))).. ( -44.30) >DroVir_CAF1 198500 120 - 1 GGAGUAGGUGUCAUCCAUGAGGGUGAUGUCACCGAUGCGACAGUGUAGCUGCUCCUCGGACGAGGAGGAGUACAGCGACAAGAUUUUGCGUCGCCGCUGCUCGUCGGCAGCAUGUUGCAG ......((((((((((....))))))...))))..(((((((.((((.((.((((((....)))))).))))))(((((..........))))).((((((....)))))).))))))). ( -53.40) >DroGri_CAF1 209927 120 - 1 CGAGUAGGUGUCGUCCAUGAGGGUGAUGUCACCGAUGCGGCAGUGCAGCUGCUCCUCCGACGAGGAUGAGUACAGCGACAACAUGUUGCGUCGUCGGCGCUCGUCCACAACAUGUUGCAG ...((((((((((((...(((((((....))))((.(((((......)))))))))).)))))((((((((...(((((.....)))))((.....))))))))))....))).)))).. ( -45.70) >DroMoj_CAF1 203472 120 - 1 CGAGUAGGUGUCGUCCAUGAGUGUGAUGUCGCCGAUGCGACAGUGGAGCUGCUCCUCCGACGAGGAGGAGUACAGCGACAAUAUGUUGCGUCGUCGCCGCUCGUCUGCAACAUGUUGCAG (((((.((((.((((((....)).)))).))))(((((((((.((..(((((((((((.....)))))))..))))..))...)))))))))......))))).((((((....)))))) ( -60.60) >DroAna_CAF1 158240 114 - 1 GGAGUAGGUGUCGUCCACCAGGGUGAUGUCGCCUAUCCGCCA---GAGCUGCUCCUCGGAUGAGGAGGAGUACAGUGACAACAUGUUGCGGCG---CCGCUCAUCGGCCACGUGCUGCCC (((.((((((.((((.((....)))))).)))))))))(((.---(.(((.((((((....)))))).))).).(..((.....))..))))(---(((.....))))............ ( -48.60) >DroPer_CAF1 218231 117 - 1 CGAAUAGGUGUCGUCCACCAGUGUAAUAUCGCCGAGACGGCAGUGUAGCUGCUCCUCGGACGAAGACGAGUACAGCGACAACAUGUUGCGUCG---ACGUUCGUUGGCAACAAGUUCGAC (((((..((((((((((....)).....((((((((..(((((.....))))).))))).))).))))).))).(((((.....)))))((((---((....)))))).....))))).. ( -43.10) >consensus CGAGUAGGUGUCGUCCACCAGGGUGAUGUCGCCGAUGCGGCAGUGGAGCUGCUCCUCCGACGAGGAGGAGUACAGCGACAACAUGUUGCGUCG___CCGCUCGUCGGCAACAUGUUGCAC .((((.((((.((((.((....)))))).))))....((((......(((..(((((....)))))..)))...(((((.....))))))))).....))))....((((....)))).. (-31.00 = -31.25 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:42 2006