| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,405,225 – 15,405,315 |
| Length | 90 |
| Max. P | 0.839660 |
| Location | 15,405,225 – 15,405,315 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 80.91 |
| Mean single sequence MFE | -24.84 |
| Consensus MFE | -14.36 |
| Energy contribution | -14.56 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15405225 90 + 27905053 UGCAGCCAAUUCAAUGCACUUUAUUAAUGGCAUCCAUGACUUGGCCCGACUCUCCUUUU---UUCGGG---U-GAUUCCCCUCCCCGAGCUCCACGU .((.(((((.(((((((.(.........)))))...))).)))))..............---.(((((---.-((......)))))))))....... ( -21.60) >DroSec_CAF1 157785 93 + 1 UGCAGCCAAUUCAAUGCACUUUAUUAAUGGCAUCCAUGACUUGGCUCGACUCUCCUUUU---UUCGGGGUGG-GAUUCCCCGCCACCAGCUCCACCU .((((((((.(((((((.(.........)))))...))).)))))).............---...(((((((-(....)))))).)).))....... ( -28.40) >DroSim_CAF1 162417 93 + 1 UGCAGCCAAUUCAAUGCACUUUAUUAAUGGCAUCCAUGACUUGGCCCGACUCUCCUUUU---UUCGGGGUGG-GAUUCCCCGCCACCAGCUCCACCU .((.(((((.(((((((.(.........)))))...))).)))))..............---...(((((((-(....)))))).)).))....... ( -27.40) >DroYak_CAF1 174851 84 + 1 UGCAGCCAAUUCAAUGCACUUUAUUAAUGGCAUCCAUGACUUGGCCCGACUCUCCUU------UCGGG-----GGUUCCC--CCACGAGCUCCCCCA ....(((((.(((((((.(.........)))))...))).)))))............------..(((-----(((((..--....))))))))... ( -23.30) >DroAna_CAF1 152201 97 + 1 AGCAGCCAAUUCAAUGCACUUUAUUAAUGGCAUCCAUGACUUCGUCGGGCUUUCUUCUCGCCUCUGGGAUGGGGGUUCCCGAGCCUGAGUCCUUUAA ....((((.((.((((.....))))))))))......(((((.((((((((..(.(((((....))))).)..))..)))))..).)))))...... ( -23.50) >consensus UGCAGCCAAUUCAAUGCACUUUAUUAAUGGCAUCCAUGACUUGGCCCGACUCUCCUUUU___UUCGGG_UGG_GAUUCCCCGCCACGAGCUCCACCU .((.(((((.(((((((.(.........)))))...))).)))))....................((((.......))))........))....... (-14.36 = -14.56 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:40 2006