Locus 5873

Sequence ID 3R_DroMel_CAF1
Location 15,396,724 – 15,396,827
Length 103
Max. P 0.650998
window9600

overview

Window 0

Location 15,396,724 – 15,396,827
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 82.90
Mean single sequence MFE -17.73
Consensus MFE -12.27
Energy contribution -13.47
Covariance contribution 1.20
Combinations/Pair 1.10
Mean z-score -1.96
Structure conservation index 0.69
SVM decision value 0.25
SVM RNA-class probability 0.650998
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15396724 103 - 27905053
AUGGGAAAAAAACAAAGAAAAACAGAAAACAUACUUUGAGCGUGUUGGAAAUUAGAAUUUCCGAUACAACCGAUACGGAUUGCGGCUGGAAAAAUAAAACAAG
..................................(((.((((((((((((((....)))))))))))..(((...)))......))).)))............ ( -19.80)
>DroGri_CAF1 191015 97 - 1
AAGAAA-A-UUAUAACAUAAAAGAGUAAACGUACUUUGAGCGUGUUGGUAAUAAGAAUUUGAGCUACAACUGAAACUGAACUGGUCUGCAAAA-UACAAA---
......-.-............((((((....))))))..(((..(..((....((..(((.((......)).)))))..))..)..)))....-......--- (  -9.60)
>DroSim_CAF1 154033 102 - 1
AUGGGAAA-AAACAAAGAAAAACAGAAAACAUACUUUGAGCGUGUUGGAAAUUAGAAUUUCCGAUACAACCGAUACGGAUUGCGGCUGGAAAAAUAGAACAAG
........-.........................(((.((((((((((((((....)))))))))))..(((...)))......))).)))............ ( -19.80)
>DroEre_CAF1 146728 100 - 1
AUGGGA---AAACAAAGGAAAAUAGAAAACAUACUUUGAGCGUGUUGGAAAUUAGAAUUUCCGAUACAACCGAUACGGAUUGCGGCUGGAAAAAUAAAACAAG
......---...(((((................)))))((((((((((((((....)))))))))))..(((...)))......)))................ ( -20.39)
>DroYak_CAF1 166370 100 - 1
AUGGAA---AAACAAAGGAAAAAAGAAAACAUACUUUGAGUGUGUUGGAAAUUAGAAUUUCCGAUACAACCGAUACGGAUUGCGGCUGGAAAAAUAAAACAAG
.(((..---...(((((................)))))..((((((((((((....)))))))))))).)))...(((.......)))............... ( -19.19)
>DroAna_CAF1 144167 94 - 1
AUGAGA---AAACAAAAGAA------AGACAUACUUUGAGCGUGUUGGAAAUUAGAAUUUCCGAUACAACUGAAACAGAUUGCGUCUGUAAAAAUAAAACAAG
......---...........------.........(((...(((((((((((....))))))))))).......((((((...))))))..........))). ( -17.60)
>consensus
AUGGGA___AAACAAAGGAAAACAGAAAACAUACUUUGAGCGUGUUGGAAAUUAGAAUUUCCGAUACAACCGAUACGGAUUGCGGCUGGAAAAAUAAAACAAG
..................................(((.((((((((((((((....)))))))))))..(((...)))......))).)))............ (-12.27 = -13.47 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:39 2006