Locus 5872

Sequence ID 3R_DroMel_CAF1
Location 15,394,371 – 15,394,469
Length 98
Max. P 0.823353
window9599

overview

Window 9

Location 15,394,371 – 15,394,469
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 92.99
Mean single sequence MFE -16.29
Consensus MFE -13.41
Energy contribution -13.97
Covariance contribution 0.56
Combinations/Pair 1.18
Mean z-score -1.60
Structure conservation index 0.82
SVM decision value 0.69
SVM RNA-class probability 0.823353
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15394371 98 - 27905053
UUAUUCGUUUGUUUUUAUGGCAC-UUUUAUUUGAUAAUUUACACGCAUUUUUUGUGCGAUUUUUGUUCUCAUGAGACUCGUUUUCGAGUGAAUGAUUCU
((((((.......(((((((.((-.......(((....)))..(((((.....)))))......)).).))))))(((((....))))))))))).... ( -17.40)
>DroSec_CAF1 147075 98 - 1
UUAUUCGUUUGUUUUUAUGGCAC-UUUUAUUUGAUAAUUUACACGCAUUUUUUGUGCGAUUUUUGUUCUCAUGAGACUCGUUUUCGAAUGAAUGAUUCU
(((((((((((.....((((..(-((.....(((.(((.....(((((.....)))))......))).))).)))..))))...))))))))))).... ( -18.40)
>DroSim_CAF1 151629 98 - 1
UUAUUCGUUUGUUUUUAUGGCAC-UUUUAUUUGAUAAUUUACACGCAUUUUUUGUGCGAUUUUUGUUCUCAUGAGACUCGUUUUCGAAUGAAUGAUUCU
(((((((((((.....((((..(-((.....(((.(((.....(((((.....)))))......))).))).)))..))))...))))))))))).... ( -18.40)
>DroEre_CAF1 144388 98 - 1
UUACUCGUUUGUUUUUAUGACAU-UUUUAUUUGAUAAUUUACACGCAUUUUUUGCGCGAUUUUUGUUCUCAUGGGACUCGUUUUUCAAUGAAUGAUUCU
....(((((..((.....(((..-.................(.((((.....)))).)......((((.....))))..)))....))..))))).... ( -14.80)
>DroYak_CAF1 163973 99 - 1
UUAUUCAUUUGUUUUUAUGGCCUUUUUUAUUUGAUAAUUUACACGCAUUUUUUGUGCGAUUUUUGUUCUCAUGCCACUCGUUUCUCAAUGAAUUAUUCG
..(((((((........((((..........(((.(((.....(((((.....)))))......))).))).))))..........)))))))...... ( -12.47)
>consensus
UUAUUCGUUUGUUUUUAUGGCAC_UUUUAUUUGAUAAUUUACACGCAUUUUUUGUGCGAUUUUUGUUCUCAUGAGACUCGUUUUCGAAUGAAUGAUUCU
(((((((((((.....((((....((((((..((.........(((((.....)))))........))..)))))).))))...))))))))))).... (-13.41 = -13.97 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:38 2006