Locus 5871

Sequence ID 3R_DroMel_CAF1
Location 15,391,325 – 15,391,419
Length 94
Max. P 0.644159
window9598

overview

Window 8

Location 15,391,325 – 15,391,419
Length 94
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 83.90
Mean single sequence MFE -28.00
Consensus MFE -18.34
Energy contribution -19.26
Covariance contribution 0.92
Combinations/Pair 1.08
Mean z-score -1.90
Structure conservation index 0.66
SVM decision value 0.23
SVM RNA-class probability 0.644159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15391325 94 + 27905053
GAGCUCCUCCAAAUGCGUGAAUGUGAAUCCCCAUGCGGAG-CACGCUCCAGAGAAUCCAAUCGAAUCGAAUGGAAUCGGAGAACCGUCCACUUAA
......((((....(((((............)))))((((-....))))...((.((((.(((...))).)))).)))))).............. ( -25.40)
>DroSec_CAF1 144004 94 + 1
GGGCUCCUCCAAAUGCGUGAAUGUGAAUCCCCAUGCGGAG-CACGCUCCAGAGAAUCCAAUCGAAUCGAAUGGAAUCGGAGAACCGUCCACUUAA
((((..((((....(((((............)))))((((-....))))...((.((((.(((...))).)))).))))))....))))...... ( -30.00)
>DroSim_CAF1 148149 94 + 1
GGGCUCCUCCAAAUGCGUGAAUGUGAAUCCCCAUGCGGAG-CACGCUCCAGAGAAUCCAAUCGAAUCCAAUGGAAUCGGAGAACCGUCCACUUAA
((((..((((....(((((............)))))((((-....))))...((.((((...........)))).))))))....))))...... ( -26.30)
>DroEre_CAF1 141431 94 + 1
GGGCUGCUCCAAAUGCGUGAAUGCGAAUCCCCAUGCGGAG-CACGCUCCAGAGAAUCCAAUCGAAUCGAAUGGAAUCGGAGAACCGUCCACUUAA
((((..((((....(((((............)))))((((-....))))...((.((((.(((...))).)))).))))))....))))...... ( -31.10)
>DroAna_CAF1 138137 78 + 1
GGUCCUCGCAGAAUGCGUG------AAUCCCCAUGUGGGGUCACGCUUGAGAGAAUCAAAUUGAAUCC----------GAG-CUUGACCACUUAA
((((((((......(((((------(..((((....))))))))))((((.....))))........)----------)))-...))))...... ( -27.20)
>consensus
GGGCUCCUCCAAAUGCGUGAAUGUGAAUCCCCAUGCGGAG_CACGCUCCAGAGAAUCCAAUCGAAUCGAAUGGAAUCGGAGAACCGUCCACUUAA
((((..((((....(((((........(((......)))..)))))((((..((.((.....)).))...))))...))))....))))...... (-18.34 = -19.26 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:37 2006