Locus 5870

Sequence ID 3R_DroMel_CAF1
Location 15,389,942 – 15,390,057
Length 115
Max. P 0.954480
window9597

overview

Window 7

Location 15,389,942 – 15,390,057
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 93.39
Mean single sequence MFE -29.74
Consensus MFE -24.38
Energy contribution -24.82
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.98
Structure conservation index 0.82
SVM decision value 1.44
SVM RNA-class probability 0.954480
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15389942 115 - 27905053
GCGAUUUCCGCUGAUUCAAUUGGUCGGGAAUUGACUGAACUGGAAACCAGUUAAGCAUAACGAAUUUAUCAAGAACCAUUUGAAAUAGAGCGGCGGUAAACGCGUUAUUAAAAUG
(((.(((((((((.(((((.(((((......((.((.((((((...)))))).))))....((.....))..).)))).)))))......)))))).))))))............ ( -29.60)
>DroSec_CAF1 142618 115 - 1
GCGAUUUCCGCUGAUUCAAUUGGUCGGGAAUCGACUGAACUGGAAACCAGUUAAGCAAAACGAAUUUAUCAAGAAUCGUUUGAAAAAGAGCGGCGGUAAACGCGUUAUUAAAAUG
(((.(((((((((.(((....(((((.....))))).((((((...)))))).....((((((.(((....))).))))))......))))))))).))))))............ ( -32.50)
>DroSim_CAF1 146755 115 - 1
GCGAUUUCCGCUGAUUCAAUUGGUCGGGAAUCGACUGAACUGGAAACCAGUUAAGCAAAACGAAUUUAUCAAGAAUCGUUUGAAAAAGAGCGGCGGUAAACGCGUUAUUAAAAUG
(((.(((((((((.(((....(((((.....))))).((((((...)))))).....((((((.(((....))).))))))......))))))))).))))))............ ( -32.50)
>DroEre_CAF1 140119 114 - 1
UCGAUUUCCGCUGAUCCAAUUGGUCGGGAAUCGAGUGAACCGGAAACCAGUUAACCAAAACGAAUUUAUCAAGAACCAUUUGAAAAAGUGCGGCGGCAAACGCGUUAUUAA-AUU
(((((((((((..((...))..).))))))))))((.(((.(....)..))).))...(((..............((((((....))))).)(((.....)))))).....-... ( -27.10)
>DroYak_CAF1 158695 115 - 1
GCGAUUUCCGCUGAUUCAAUUGGUCGAAAAUCGACUGAACCGGAAACCAGUUAACCAAAACGAAUUUAUCAAGAACCAUUUGAAAAAGAGCGGCGGCAAACGCGUUAUUAAAAUU
(((.(((((((((.(((..(..((((.....))))..)...((......(((......)))((.....)).....))..........))))))))).))))))............ ( -27.00)
>consensus
GCGAUUUCCGCUGAUUCAAUUGGUCGGGAAUCGACUGAACUGGAAACCAGUUAAGCAAAACGAAUUUAUCAAGAACCAUUUGAAAAAGAGCGGCGGUAAACGCGUUAUUAAAAUG
.((((((((((..((...))..).))))))))).((.((((((...)))))).)).....((..(((.(((((.....))))).)))...))(((.....)))............ (-24.38 = -24.82 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:36 2006