Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,185,061 – 2,185,152 |
Length | 91 |
Max. P | 0.624258 |
Location | 2,185,061 – 2,185,152 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 78.00 |
Mean single sequence MFE | -16.46 |
Consensus MFE | -10.40 |
Energy contribution | -10.43 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.14 |
Mean z-score | -1.39 |
Structure conservation index | 0.63 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2185061 91 + 27905053 ACUUCCA----GCUUAUGGGGUAUCACUCAACUUACUCC--AUUGCAGCAUCCCUUCCUAAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA .......----(((.((((((((..........))))))--))...))).............(((((((........)))))))............. ( -23.70) >DroVir_CAF1 4862 93 + 1 AGAUUUUUAAAGCUUU-UUAAUUUA-C--AUUGUAUUUCAAUUUGCAGCAUCCCUUCCUGAAAUUGGCGCGUCCAUUGGCCAGUCUGACGCCUUUGA ......((((((....-........-.--........(((((((.(((.(.....).)))))))))).(((((....((....)).))))))))))) ( -13.10) >DroSec_CAF1 4302 91 + 1 AUUUCUA----GCUUAUUGGUUAUCCCUUAACUUACUCC--AUUGCAGCAUCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA .......----(((((.(((.................))--).)).))).............(((((((........)))))))............. ( -16.03) >DroSim_CAF1 4186 91 + 1 AUUUCUA----GCUUAUGGGUUAUCCCUUAAAUUACUCC--AUUGCAGCAUCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA .......----(((.((((..((..........))..))--))...))).............(((((((........)))))))............. ( -17.80) >DroEre_CAF1 4287 80 + 1 GCUUCUA----G-------CUUAAACCUCAAC----UCU--UUUGCAGCACCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA .......----(-------((((((.......----...--)))).))).............(((((((........)))))))............. ( -12.90) >DroYak_CAF1 4289 88 + 1 ACUUUAA----A---ACGUCAUAAACCUCAACUUACUCU--AUUGCAGCAUCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA .......----.---..((((..................--....(((.(.....).)))..(((((((........))))))).))))........ ( -15.20) >consensus ACUUCUA____GCUUAUGGGUUAUACCUCAACUUACUCC__AUUGCAGCAUCCCUUCCUGAAACUGGCCCGUCCAUUGGCCAGUCUGACUCCCUUGA ..............................................................(((((((........)))))))............. (-10.40 = -10.43 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:50 2006